logsdon-lab / CenMAPLinks
Centromere mapping and annotation pipeline
☆15Updated last week
Alternatives and similar repositories for CenMAP
Users that are interested in CenMAP are comparing it to the libraries listed below
Sorting:
- Phasing reads with secondary alignments☆20Updated 10 months ago
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆23Updated last year
- A module for improving the insertion sequences of structural variant calls☆32Updated 4 years ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Updated last year
- SV calling for diploid assemblies☆28Updated last year
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- COsine-based SImilarity Genotyper using pangenomes☆21Updated last week
- Tool for decomposition centromeric assemblies and long reads into monomers☆35Updated 3 years ago
- A Hi-C scaffolding method☆22Updated 3 years ago
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆12Updated 6 years ago
- Convert Tandem Repeat Finder dat file output into gff3 format☆28Updated 9 months ago
- a fork of the gap-closing pipeline PBJelly☆15Updated 6 years ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆17Updated last month
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆29Updated 3 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- FastK based version of Merqury☆28Updated 2 weeks ago
- ☆36Updated 2 months ago
- Very simple and configurable all-in-one dotplot program☆14Updated 2 years ago
- Extracting paths from assembly graphs☆24Updated last year
- Scripts used to perform analyses in Rice et al. (2023)☆15Updated last year
- ☆17Updated 3 months ago
- Programs implementing the trio-binning genome assembly method☆18Updated last year
- ☆25Updated 2 months ago
- ☆21Updated 7 months ago
- Snakemake pipeline to analyze transposable element 'omics data.☆27Updated this week
- TD2☆18Updated 3 months ago
- Simple tools for working with Hi-C data☆18Updated 6 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 3 months ago
- ☆28Updated last year