baozg / assembly-annotation-pipelineLinks
Plant genome assembly and annotation pipeline using snakemake
☆47Updated 4 months ago
Alternatives and similar repositories for assembly-annotation-pipeline
Users that are interested in assembly-annotation-pipeline are comparing it to the libraries listed below
Sorting:
- BITACORA: A Bioinformatics tool for gene family annotation☆48Updated 4 months ago
- A tool for performing collinearity-incorporating homology inference☆33Updated 2 years ago
- Genome Annotation Pipeline☆36Updated last year
- ☆30Updated 9 months ago
- This is a method to find telomeres and centromeres in plants.☆42Updated 2 years ago
- A shiny application to visualize MCscan result☆37Updated 3 years ago
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆40Updated last week
- ☆40Updated 2 years ago
- use long sequenced reads to close gaps in assemblies☆39Updated 7 years ago
- scripts for the project of seven thaliana genomes assembly☆41Updated 4 years ago
- ☆29Updated last year
- ☆38Updated 2 months ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆34Updated last year
- An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes☆39Updated 2 weeks ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on Pore-C, HiFi-C/CiFi or Hi-C.☆60Updated 3 months ago
- ☆44Updated 2 years ago
- Chromosome-scale and haplotype-resolved assmebly of tetraploid cultiavetd potato with polyploidy graph binning☆28Updated last year
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69Updated 4 years ago
- A genome assembly assessment pipeline.☆37Updated last year
- ☆42Updated last year
- A tool for quick and accurate calculation of syntenic diversity.☆42Updated 2 weeks ago
- ☆32Updated 6 months ago
- MITE Tracker: An accurate approach to identify miniature inverted-repeat transposable elements in large genomes☆20Updated last year
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆51Updated 2 months ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆42Updated last year
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆28Updated 4 years ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆33Updated 8 months ago
- HiCAT new project☆29Updated 4 months ago