swarris / PacasusLinks
Correction of palindromes in long reads from PacBio and Nanopore
☆14Updated 3 years ago
Alternatives and similar repositories for Pacasus
Users that are interested in Pacasus are comparing it to the libraries listed below
Sorting:
- Convert HAL to VG☆22Updated 10 months ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 7 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- Scaffolding with assembly likelihood optimization☆22Updated 4 years ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 4 years ago
- This is the Haplotypo repository☆20Updated last year
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 5 years ago
- transposable element typing pipeline☆18Updated last year
- Find Unique genomic Regions☆30Updated 3 months ago
- Read nanopore sequence reads in real-time☆14Updated 8 years ago
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Scripts to split reference and run mummer in parallel on an SGE cluster☆11Updated 8 years ago
- A comparative genome scaffolding tool☆17Updated 6 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆15Updated 4 years ago
- Location of structural errors in a genome assembly and structural variations between a pair of genomes☆11Updated 5 years ago
- Method to optimally select samples for validation and resequencing☆27Updated 4 years ago
- Implementation of ToL genome assembly workflows☆20Updated 2 weeks ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Genomic Assemblies Merger for NGS☆26Updated last year
- ☆20Updated 3 years ago
- Functions to compare a SV call sets against a truth set.☆30Updated last week
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated 2 weeks ago
- A lightweight library for working with PAF (Pairwise mApping Format) files☆31Updated 3 years ago
- The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python☆31Updated 7 years ago