swarris / PacasusLinks
Correction of palindromes in long reads from PacBio and Nanopore
☆14Updated 3 years ago
Alternatives and similar repositories for Pacasus
Users that are interested in Pacasus are comparing it to the libraries listed below
Sorting:
- Detect and phase minor SNVs from long-read sequencing data☆13Updated 3 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- Scaffolding with assembly likelihood optimization☆21Updated 4 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆35Updated 3 months ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 5 months ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Minor Variant Calling and Phasing Tools☆15Updated 3 years ago
- Archived version 1.0.2☆16Updated 5 years ago
- ☆14Updated 2 years ago
- ☆21Updated 5 years ago
- Functions to compare a SV call sets against a truth set.☆30Updated 3 months ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- Profile HMM-based hybrid error correction algorithm for long reads☆21Updated 7 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- Hybrid Error Correction of Long Reads using Iterative Learning☆10Updated 7 years ago
- ☆16Updated 8 months ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- Location of structural errors in a genome assembly and structural variations between a pair of genomes☆11Updated 5 years ago
- Implementation of ToL genome assembly workflows☆20Updated this week
- Find Unique genomic Regions☆30Updated last week
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆15Updated 4 years ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 9 months ago
- A software for discovery, genotyping and characterization of structural variants☆22Updated last year
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated last week
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- A lightweight library for working with PAF (Pairwise mApping Format) files☆30Updated 3 years ago
- Hidden Markov Model based Copy number caller☆20Updated 11 months ago
- Convert HAL to VG☆22Updated last year