swarris / PacasusLinks
Correction of palindromes in long reads from PacBio and Nanopore
☆14Updated 3 years ago
Alternatives and similar repositories for Pacasus
Users that are interested in Pacasus are comparing it to the libraries listed below
Sorting:
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- Scaffolding with assembly likelihood optimization☆21Updated 5 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- Detect and phase minor SNVs from long-read sequencing data☆14Updated 4 years ago
- Archived version 1.0.2☆16Updated 6 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆16Updated 4 years ago
- Functions to compare a SV call sets against a truth set.☆30Updated 7 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆35Updated 6 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 9 months ago
- Profile HMM-based hybrid error correction algorithm for long reads☆21Updated 7 years ago
- Read nanopore sequence reads in real-time☆14Updated 9 years ago
- Haplotype-aware genome assembly toolkit☆30Updated 6 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 4 months ago
- Scaffolding with RNA-seq read alignment☆21Updated 7 years ago
- Validate and edit small eukaryotic genome assemblies☆32Updated 2 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆25Updated 5 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆36Updated last month
- This is the Haplotypo repository☆22Updated last year
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- Scripts to split reference and run mummer in parallel on an SGE cluster☆11Updated 9 years ago
- Population-wide Deletion Calling☆35Updated 9 months ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- ☆28Updated 3 years ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 5 years ago
- fastq quality assessment and filtering tool☆18Updated 3 years ago
- ☆11Updated 11 months ago
- Find Unique genomic Regions☆32Updated 2 weeks ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Updated last year
- Example of SGTK application for E.coli dataset:☆31Updated 5 years ago