kishwarshafin / helenLinks
H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)
☆72Updated 4 years ago
Alternatives and similar repositories for helen
Users that are interested in helen are comparing it to the libraries listed below
Sorting:
- Hybrid error correction of long reads using colored de Bruijn graphs☆104Updated 2 weeks ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆103Updated 4 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- ☆100Updated last year
- Toolkit for calling structural variants using short or long reads☆109Updated last week
- ☆117Updated this week
- Pipeline to convert a haploid assembly into diploid☆103Updated 7 months ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Updated 4 years ago
- a long-read error correction tool using the multi-string Burrows Wheeler Transform☆45Updated 5 years ago
- ☆77Updated 5 years ago
- A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.☆85Updated 9 months ago
- vcfdist: Accurately benchmarking phased variant calls☆83Updated last month
- Copy number caller for long read data including SNV utilization☆67Updated 5 months ago
- ☆66Updated 2 weeks ago
- Tools for the analysis of structural variation in genomes☆81Updated last year
- SV caller for nanopore data☆92Updated 5 years ago
- A local-haplotagging-based small and structural variant caller☆80Updated 3 weeks ago
- Wally: Visualization of aligned sequencing reads and contigs☆117Updated 5 months ago
- Structural Variant Index☆75Updated 9 months ago
- Call select base modifications in PacBio HiFi reads☆14Updated 7 months ago
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆68Updated 3 years ago
- A tool for Racon polishing of miniasm assemblies☆77Updated 2 weeks ago
- Splitting of sequence reads by internal adapter sequence search☆51Updated 2 years ago
- Simple pileup-based variant caller☆91Updated 4 months ago
- ☆81Updated 6 months ago
- ☆48Updated last year
- Structural variant caller for real-time long-read sequencing data☆57Updated 2 years ago
- ☆49Updated 10 months ago
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆39Updated last year
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆53Updated last year