kishwarshafin / helen
H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)
☆69Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for helen
- Tandem repeat genotyping and visualization from PacBio HiFi data☆106Updated this week
- MarginPolish: Graph based assembly polishing☆45Updated 4 years ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆97Updated 3 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆108Updated 2 months ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆86Updated last month
- PGR-TK: Pangenome Research Tool Kit☆94Updated 7 months ago
- Pipeline to convert a haploid assembly into diploid☆92Updated 6 months ago
- Phased assembly variant caller☆98Updated last month
- SV caller for nanopore data☆91Updated 4 years ago
- Structural Variant Index☆70Updated this week
- Simple pileup-based variant caller☆83Updated 7 months ago
- ☆72Updated last month
- ☆48Updated 3 months ago
- ☆60Updated last month
- Error correction of ONT transcript reads☆58Updated last year
- vcfdist: Accurately benchmarking phased variant calls☆78Updated this week
- Pangenome-based genome inference☆114Updated last week
- Structural variant caller for real-time long-read sequencing data☆55Updated last year
- ☆34Updated last week
- Tools for the analysis of structural variation in genomes☆77Updated 8 months ago
- Toolkit for calling structural variants using short or long reads☆99Updated this week
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆92Updated 2 weeks ago
- Fast and accurate coordinate conversion between assemblies☆110Updated 2 months ago
- Splitting of sequence reads by internal adapter sequence search☆52Updated last year
- Same species annotation lift over pipeline.☆96Updated last year
- ☆77Updated 4 years ago
- ☆46Updated 2 weeks ago
- ☆47Updated 4 years ago
- Show pangenome graphs in an easy way☆53Updated 2 years ago
- ☆79Updated 6 months ago