Alternatives and similar repositories for helen:

Users that are interested in helen are comparing it to the libraries listed below

• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆114Updated last week
• GeneDx / pgr-tk
  PGR-TK: Pangenome Research Tool Kit
  ☆99Updated last year
• UCSC-nanopore-cgl / MarginPolish
  MarginPolish: Graph based assembly polishing
  ☆46Updated 4 years ago
• mroosmalen / nanosv
  SV caller for nanopore data
  ☆91Updated 4 years ago
• ryanlayer / stix
  Structural Variant Index
  ☆72Updated 4 months ago
• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆100Updated 3 months ago
• rrwick / MinION-desktop
  Scripts and programs for the Holt Lab's MinION desktop
  ☆32Updated 4 years ago
• lh3 / minipileup
  Simple pileup-based variant caller
  ☆89Updated last week
• kjenike / panagram
  ☆61Updated last month
• daewoooo / SVbyEye
  ☆87Updated 2 months ago
• lh3 / dipcall
  Reference-based variant calling pipeline for a pair of phased haplotype assemblies
  ☆100Updated 3 years ago
• LooseLab / bulkvis
  ☆48Updated 5 months ago
• milkschen / leviosam2
  Fast and accurate coordinate conversion between assemblies
  ☆112Updated last month
• rrwick / Minipolish
  A tool for Racon polishing of miniasm assemblies
  ☆74Updated 4 years ago
• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆97Updated last year
• marschall-lab / panacus
  Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
  ☆100Updated last month
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆110Updated 10 months ago
• EichlerLab / pav
  Phased assembly variant caller
  ☆112Updated 4 months ago
• comprna / RATTLE
  Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing
  ☆57Updated last year
• kcleal / dysgu
  Toolkit for calling structural variants using short or long reads
  ☆102Updated this week
• mapleforest / HaploMerger2
  ☆43Updated 8 years ago
• Dfam-consortium / TETools
  Dfam Transposable Element Tools Docker container.
  ☆90Updated last month
• human-pangenomics / HPP_Year1_Assemblies
  Assemblies from HPP Year 1 production
  ☆73Updated last year
• PacificBiosciences / barcoding
  Lima - Demultiplex Barcoded PacBio Samples
  ☆66Updated 2 months ago
• PacificBiosciences / pb-human-wgs-workflow-snakemake
  DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads
  ☆38Updated last year
• epi2me-labs / wf-basecalling
  ☆39Updated last week
• giesselmann / STRique
  Nanopore raw signal repeat detection pipeline
  ☆45Updated 2 years ago
• wdecoster / cramino
  A *fast* tool for BAM/CRAM quality evaluation, intended for long reads
  ☆146Updated 3 weeks ago
• CSB5 / lofreq
  LoFreq Star: Sensitive variant calling from sequencing data
  ☆105Updated 2 years ago
• rrwick / August-2019-consensus-accuracy-update
  A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies
  ☆59Updated 5 years ago