H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)
☆73Oct 28, 2020Updated 5 years ago
Alternatives and similar repositories for helen
Users that are interested in helen are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MarginPolish: Graph based assembly polishing☆47Nov 24, 2020Updated 5 years ago
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆273Oct 13, 2022Updated 3 years ago
- ☆35Feb 20, 2020Updated 6 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆35Dec 11, 2019Updated 6 years ago
- Automation of pipelines that depend on preexisting assembly, polishing, and alignment tools. Performance evaluation and visualization of …☆13May 29, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Analysis components from Oxford Nanopore Research☆97Apr 9, 2026Updated last month
- Validate and edit small eukaryotic genome assemblies☆32Apr 28, 2023Updated 3 years ago
- ☆46Jun 21, 2020Updated 5 years ago
- Graph based multi genome aligner☆49Sep 17, 2021Updated 4 years ago
- A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, a…☆16Jan 25, 2024Updated 2 years ago
- ☆21Nov 1, 2019Updated 6 years ago
- Adaptive haplotype assembly for efficiently leveraging high coverage in long reads☆13Sep 4, 2018Updated 7 years ago
- An algorithm for centromere assembly using long error-prone reads☆25May 25, 2021Updated 5 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Nov 11, 2020Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Error correction of ONT transcript reads☆58Sep 6, 2023Updated 2 years ago
- Interactive visualization of assembly graphs☆83Apr 2, 2022Updated 4 years ago
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Feb 28, 2017Updated 9 years ago
- De novo genome assembler for long uncorrected reads☆231Nov 15, 2023Updated 2 years ago
- ☆15Aug 22, 2023Updated 2 years ago
- alignment to variation graph inducer☆159Apr 11, 2026Updated last month
- Graph-based mapping of long sequences, noisy or HiFi.☆55Oct 5, 2020Updated 5 years ago
- Long read / genome alignment software☆317Dec 16, 2025Updated 5 months ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Feb 2, 2022Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- GBWT-based handle graph☆33May 15, 2026Updated 2 weeks ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Apr 8, 2021Updated 5 years ago
- Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment☆198Mar 8, 2022Updated 4 years ago
- Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.☆15Dec 16, 2019Updated 6 years ago
- URMAP ultra-fast read mapper☆38Jun 15, 2020Updated 5 years ago
- ☆46May 1, 2026Updated 3 weeks ago
- Pipeline to convert a haploid assembly into diploid☆111Jan 23, 2025Updated last year
- An accurate and ultra-fast hybrid genome assembler☆88Apr 10, 2024Updated 2 years ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆174May 30, 2021Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Exact Tandem Repeat Finder (not a TRF replacement)☆51Oct 22, 2019Updated 6 years ago
- adapter trimmer for Oxford Nanopore reads☆384May 8, 2024Updated 2 years ago
- diploid SNV caller for error-prone reads☆210Apr 26, 2024Updated 2 years ago
- Nanopore data assembler☆169Mar 27, 2022Updated 4 years ago
- Yet Another Chimeric Read Detector☆86Nov 7, 2024Updated last year
- ✏️ Genome assembly polishing & SNV detection☆73May 7, 2026Updated 3 weeks ago
- k-mer based assembly evaluation☆343May 21, 2026Updated last week