kishwarshafin / helenLinks
H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)
☆70Updated 4 years ago
Alternatives and similar repositories for helen
Users that are interested in helen are comparing it to the libraries listed below
Sorting:
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Pipeline to convert a haploid assembly into diploid☆100Updated 4 months ago
- A tool for Racon polishing of miniasm assemblies☆75Updated this week
- ☆48Updated 6 months ago
- Splitting of sequence reads by internal adapter sequence search☆51Updated 2 years ago
- Simple pileup-based variant caller☆90Updated last month
- Wally: Visualization of aligned sequencing reads and contigs☆117Updated last month
- ☆47Updated 4 years ago
- PGR-TK: Pangenome Research Tool Kit☆99Updated last year
- A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.☆80Updated 6 months ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆107Updated last week
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆100Updated 4 years ago
- SV caller for nanopore data☆91Updated 4 years ago
- ☆116Updated last week
- ☆48Updated 9 months ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆74Updated 4 years ago
- Same species annotation lift over pipeline.☆97Updated last year
- ☆80Updated 3 months ago
- Estimating k-mer coverage histogram of genomics data☆78Updated last year
- Call select base modifications in PacBio HiFi reads☆7Updated 4 months ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- ☆44Updated 8 years ago
- ☆28Updated 3 weeks ago
- A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies☆59Updated 5 years ago
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆38Updated last year
- ONT assembly and Illumina polishing pipeline☆89Updated 4 years ago
- TGS scaffolding☆46Updated 3 years ago
- Evaluate variant calls and its combination with k-mer multiplicity☆66Updated 2 years ago
- Error correction of ONT transcript reads☆58Updated last year
- Tools to annotate genomes using long read transcriptomics data☆45Updated 4 years ago