Alternatives and similar repositories for maf2synteny

Users that are interested in maf2synteny are comparing it to the libraries listed below

• compbiol / CAMSA
  CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies
  ☆24Updated 5 years ago
• PacificBiosciences / pbipa
  Improved Phased Assembler
  ☆28Updated 3 years ago
• lpryszcz / pyScaf
  Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.
  ☆24Updated 6 years ago
• simonhmartin / asynt
  Genome alignment and synteny plots
  ☆30Updated 2 years ago
• lh3 / calN50
  Compute N50/NG50 and auN/auNG
  ☆32Updated last year
• HullUni-bioinformatics / TE-search-tools
  Python wrappers for programs that search for transposable elements
  ☆19Updated 8 years ago
• A-J-F-Mackintosh / syngraph
  Toolkit for evolutionary analyses of linkage groups
  ☆31Updated 10 months ago
• vgteam / sv-genotyping-paper
  ☆30Updated 5 years ago
• wtsi-hpag / scanPAV
  Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.
  ☆29Updated 7 years ago
• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆46Updated 4 years ago
• aubombarely / GenoToolBox
  A box of genomics tools
  ☆21Updated 4 years ago
• bergmanlab / TELR
  TELR is a fast non-reference transposable element detector from long read sequencing data.
  ☆33Updated last year
• DrosophilaGenomeEvolution / TrEMOLO
  Transposable Elements MOvement detection using LOng reads
  ☆21Updated 3 weeks ago
• agshumate / LiftoffTools
  ☆27Updated last year
• sanger-tol / yahs
  Yet another Hi-C scaffolding tool
  ☆19Updated 7 months ago
• HuffordLab / GenomeQC
  ☆32Updated 4 years ago
• moold / paf2dotplot
  Draw a dot plot from a paf alignment
  ☆29Updated last month
• Rinoahu / SwiftOrtho
  A high performance tool to identify orthologs and paralogs across genomes.
  ☆26Updated 2 years ago
• almeidasilvaf / doubletrouble
  An R package to identify and classify duplicated genes from whole-genome protein sequence data
  ☆26Updated 2 months ago
• Farre-lab / syntenyPlotteR
  R package to draw syntenic plots in 3 different styles
  ☆41Updated last year
• WHops / NAHRwhals
  R package and wrapper functions for identifying serial structural variations from genome assemblies
  ☆28Updated 8 months ago
• esolares / HapSolo
  Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding
  ☆20Updated 3 months ago
• jmsong2 / GenomeSyn
  We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …
  ☆27Updated 3 years ago
• schatzlab / pseudohaploid
  Create a pseudohaploid assembly from a partially resolved diploid assembly
  ☆32Updated 5 years ago
• reubwn / collinearity
  scripts to parse and analyse MCScanX collinearity output
  ☆31Updated 5 years ago
• alachins / sweed
  Likelihood-based Selective Sweep Detection
  ☆37Updated last year
• dfguan / pin_hic
  A Hi-C scaffolding method
  ☆23Updated 3 years ago
• srividya22 / geneLift
  Gene model transfer from closely related reference genomes using cDNA alignments
  ☆10Updated 4 years ago
• Adamtaranto / teloclip
  A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
  ☆37Updated last month
• clemgoub / rm2gff3
  Convert RepeatMasker ".out" file into a gff3 with colors!!!
  ☆21Updated 4 years ago