mikolmogorov / maf2synteny
A tool for recovering synteny blocks from multiple alignment
☆29Updated 3 years ago
Alternatives and similar repositories for maf2synteny:
Users that are interested in maf2synteny are comparing it to the libraries listed below
- assembly evaluation tool☆34Updated 2 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 4 years ago
- Toolkit for evolutionary analyses of linkage groups☆26Updated 6 months ago
- Genome alignment and synteny plots☆27Updated last year
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆25Updated 3 years ago
- Compute N50/NG50 and auN/auNG☆31Updated last year
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 3 years ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆20Updated 4 years ago
- Domain based annotation of transposable elements☆19Updated this week
- ☆35Updated 10 months ago
- Improved Phased Assembler☆27Updated 2 years ago
- Chromosome-level synteny plotting using orthologous regions☆28Updated 4 months ago
- ☆31Updated 5 years ago
- A box of genomics tools☆21Updated 4 years ago
- Yet another Hi-C scaffolding tool☆18Updated 3 months ago
- scripts to parse and analyse MCScanX collinearity output☆30Updated 4 years ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Updated 6 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆19Updated 5 months ago
- A Hi-C scaffolding method☆22Updated 3 years ago
- FastK based version of Merqury☆22Updated last month
- Identification of segmental duplications in the genome☆26Updated 2 years ago
- Draw a dot plot from a paf alignment☆25Updated last month
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 6 years ago
- Mabs, a genome assembly tool which optimizes parameters of Hifiasm and Flye☆29Updated last month
- Gene model transfer from closely related reference genomes using cDNA alignments☆10Updated 4 years ago
- Genome assembly soft-masking using Red (REpeat Detector)☆15Updated 6 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆34Updated last month
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆26Updated 4 months ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆13Updated 4 years ago