mikolmogorov / maf2syntenyLinks
A tool for recovering synteny blocks from multiple alignment
☆32Updated 4 years ago
Alternatives and similar repositories for maf2synteny
Users that are interested in maf2synteny are comparing it to the libraries listed below
Sorting:
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- scripts to parse and analyse MCScanX collinearity output☆33Updated 5 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 8 months ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 9 months ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆28Updated last year
- A Hi-C scaffolding method☆22Updated 4 years ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Updated 7 years ago
- ☆31Updated 6 years ago
- FastK based version of Merqury☆29Updated 3 months ago
- Visualising discordant reads☆15Updated 10 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆31Updated 6 months ago
- Unzip assembly graphs with Hi-C data and/or long reads.☆27Updated last year
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆31Updated 3 years ago
- A module for improving the insertion sequences of structural variant calls☆33Updated 4 years ago
- Genome alignment and synteny plots☆33Updated 2 years ago
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆26Updated 2 months ago
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 6 years ago
- Genome assembly soft-masking using Red (REpeat Detector)☆18Updated 7 years ago
- A comparative genome scaffolding tool☆16Updated 7 years ago
- Yet another Hi-C scaffolding tool☆22Updated last year
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆24Updated 5 years ago
- ☆29Updated 2 years ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆37Updated 3 years ago
- SV genotyper for long reads with a variation graph☆15Updated 4 months ago
- Consensus genome annotation using OMA☆31Updated 6 months ago
- A box of genomics tools☆21Updated 5 years ago