mikolmogorov / maf2synteny
A tool for recovering synteny blocks from multiple alignment
☆30Updated 3 years ago
Alternatives and similar repositories for maf2synteny:
Users that are interested in maf2synteny are comparing it to the libraries listed below
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 4 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆34Updated last month
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 6 months ago
- Compute N50/NG50 and auN/auNG☆31Updated last year
- Improved Phased Assembler☆28Updated 3 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆25Updated 3 years ago
- ☆32Updated 4 years ago
- Genome alignment and synteny plots☆29Updated last year
- FastK based version of Merqury☆23Updated 2 weeks ago
- A high performance tool to identify orthologs and paralogs across genomes.☆26Updated 2 years ago
- A Hi-C scaffolding method☆23Updated 3 years ago
- Yet another Hi-C scaffolding tool☆19Updated 5 months ago
- ☆26Updated last year
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆20Updated 4 years ago
- scripts to parse and analyse MCScanX collinearity output☆31Updated 5 years ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Updated 6 years ago
- Multi-genome synteny block visualization tool☆33Updated 2 months ago
- Calculate circos format data of GC content and GC skew from genome data.☆11Updated 10 years ago
- Genome assembly soft-masking using Red (REpeat Detector)☆17Updated 6 years ago
- Toolkit for evolutionary analyses of linkage groups☆28Updated 8 months ago
- ☆35Updated last year
- A box of genomics tools☆21Updated 4 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆24Updated last week
- Haploidy and Size Completeness Estimation☆13Updated 11 months ago
- Draw a dot plot from a paf alignment☆26Updated 3 months ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆37Updated 5 months ago
- Visualising discordant reads☆15Updated 9 years ago
- Domain based annotation of transposable elements☆19Updated 2 months ago