kensung-lab / hypo

Related projects ⓘ

Alternatives and complementary repositories for hypo

• bcgsc / ntEdit
  ✏️ Genome assembly polishing & SNV detection
  ☆64Updated this week
• vpc-ccg / haslr
  A fast tool for hybrid genome assembly of long and short reads
  ☆76Updated 4 years ago
• bcgsc / ntJoin
  🔗Genome assembly scaffolder using minimizer graphs
  ☆83Updated last month
• arangrhie / merfin
  Evaluate variant calls and its combination with k-mer multiplicity
  ☆64Updated last year
• Adamtaranto / teloclip
  A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
  ☆35Updated last week
• bcgsc / ntSynt
  Detecting multi-genome synteny using minimizer graph mapping
  ☆71Updated this week
• bcgsc / LongStitch
  Correct and scaffold assemblies using long reads
  ☆47Updated last year
• rrwick / Minipolish
  A tool for Racon polishing of miniasm assemblies
  ☆73Updated 3 years ago
• rrwick / Rebaler
  reference-based long read assemblies of bacterial genomes
  ☆47Updated 3 years ago
• josephryan / estimate_genome_size.pl
  Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish
  ☆56Updated last year
• jts / assembly_accuracy
  tools for assessing the accuracy of genome assemblies
  ☆34Updated 7 months ago
• lbcb-sci / ra
  Assembler for raw de novo genome assembly of long uncorrected reads.
  ☆37Updated 4 years ago
• dwinter / pafr
  Read, manipulate and visualize 'Pairwise mApping Format' data in R
  ☆68Updated 3 years ago
• shingocat / lrscaf
  TGS scaffolding
  ☆46Updated 3 years ago
• ChongLab / Inspector
  A tool for evaluate long-read de novo assembly results
  ☆42Updated 2 months ago
• Kuanhao-Chao / LiftOn
  🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
  ☆64Updated last month
• UCSC-nanopore-cgl / MarginPolish
  MarginPolish: Graph based assembly polishing
  ☆45Updated 4 years ago
• eldariont / svim-asm
  Structural Variant Identification Method using Genome Assemblies
  ☆93Updated 2 years ago
• mourisl / centrifuger
  Classifier for metagenomic sequences using FM-index with run-block compressed BWT.
  ☆51Updated this week
• c-zhou / oatk
  A organelle de novo genome assembly toolkit
  ☆45Updated 3 weeks ago
• holtjma / fmlrc
  a long-read error correction tool using the multi-string Burrows Wheeler Transform
  ☆46Updated 4 years ago
• DecodeGenetics / Ratatosk
  Hybrid error correction of long reads using colored de Bruijn graphs
  ☆97Updated last month
• marschall-lab / panacus
  Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
  ☆86Updated last month
• daewoooo / SVbyEye
  ☆72Updated last month
• cboursnell / crb-blast
  Conditional Reciprocal Best Blast
  ☆40Updated 7 years ago
• mcfrith / last-genome-alignments
  ☆51Updated last year
• lh3 / unimap
  A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment
  ☆88Updated 3 years ago
• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆45Updated 3 years ago
• mobinasri / flagger
  Evaluating genome assemblies
  ☆63Updated this week