Alternatives and similar repositories for hypo

Users that are interested in hypo are comparing it to the libraries listed below

• rrwick / Rebaler
  reference-based long read assemblies of bacterial genomes
  ☆51Updated 4 years ago
• harta55 / EnTAP
  EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP
  ☆41Updated last year
• jts / assembly_accuracy
  tools for assessing the accuracy of genome assemblies
  ☆35Updated last year
• arangrhie / merfin
  Evaluate variant calls and its combination with k-mer multiplicity
  ☆67Updated 3 years ago
• uio-cels / NucDiff
  In-depth characterization and annotation of differences between two sets of DNA sequences
  ☆63Updated 5 years ago
• HuffordLab / GenomeQC
  ☆35Updated 5 years ago
• lh3 / calN50
  Compute N50/NG50 and auN/auNG
  ☆33Updated 2 years ago
• Adamtaranto / teloclip
  A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
  ☆50Updated 2 months ago
• bcgsc / LongStitch
  🪡Correct and scaffold assemblies using long reads
  ☆57Updated 5 months ago
• sanger-pathogens / assembly_improvement
  Improve the quality of a denovo assembly by scaffolding and gap filling
  ☆57Updated 5 years ago
• ChongLab / Inspector
  A tool for evaluate long-read de novo assembly results
  ☆48Updated last year
• kjenike / panagram
  ☆68Updated last week
• josephryan / estimate_genome_size.pl
  Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish
  ☆57Updated 3 years ago
• AliTVTeam / AliTV
  Visualize whole genome alignments as linear maps
  ☆74Updated 3 weeks ago
• KamilSJaron / k-mer-approaches-for-biodiversity-genomics
  k-mer learning materials
  ☆83Updated 11 months ago
• dwinter / pafr
  Read, manipulate and visualize 'Pairwise mApping Format' data in R
  ☆77Updated 4 years ago
• kakitone / finishingTool
  finshingTool
  ☆54Updated 9 years ago
• Gaius-Augustus / TSEBRA
  TSEBRA: Transcript Selector for BRAKER
  ☆49Updated 2 months ago
• rhysf / Synima
  Synteny Imager
  ☆65Updated last month
• shingocat / lrscaf
  TGS scaffolding
  ☆47Updated 4 years ago
• genomeannotation / GAG
  Generates an NCBI .tbl file of annotations on a genome.
  ☆68Updated 7 years ago
• vpc-ccg / haslr
  A fast tool for hybrid genome assembly of long and short reads
  ☆78Updated 5 years ago
• bcgsc / ntJoin
  🔗Genome assembly scaffolder using minimizer graphs
  ☆85Updated last year
• PacificBiosciences / jasmine
  Call select base modifications in PacBio HiFi reads
  ☆15Updated 3 months ago
• thackl / minidot
  Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2
  ☆77Updated 9 years ago
• ythuang0522 / homopolish
  High-quality Nanopore-only genome polisher
  ☆69Updated last year
• aubombarely / Organelle_PBA
  A software to assemble chloroplast and mitochodrial genomes using PacBio data
  ☆40Updated 5 years ago
• TF-Chan-Lab / panGraphViewer
  Show pangenome graphs in an easy way
  ☆58Updated 6 months ago
• DecodeGenetics / Ratatosk
  Hybrid error correction of long reads using colored de Bruijn graphs
  ☆108Updated 3 weeks ago
• univieCUBE / gepard
  Genome Pair Rapid Dotter
  ☆67Updated 4 years ago