HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies
☆67Feb 23, 2020Updated 6 years ago
Alternatives and similar repositories for hypo
Users that are interested in hypo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A gap-closing software tool that uses long reads to enhance genome assembly.☆243Sep 6, 2024Updated last year
- A nextflow pipeline for polishing CLR assemblies☆18Feb 3, 2023Updated 3 years ago
- 🪡Correct and scaffold assemblies using long reads☆58Apr 1, 2026Updated 3 months ago
- Reduction of Althaps and Duplicate Contigs for Improved Downstream Analysis☆21Jun 28, 2026Updated 3 weeks ago
- 🔗Genome assembly scaffolder using minimizer graphs☆88Apr 1, 2026Updated 3 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- This is the official site for JASPER (Jellyfish based Assembly Sequence Polisher for Error Reduction)☆12Jun 27, 2024Updated 2 years ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆108Jan 17, 2026Updated 6 months ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆213Nov 18, 2022Updated 3 years ago
- High-quality Nanopore-only genome polisher☆71Aug 16, 2024Updated last year
- An accurate and ultra-fast hybrid genome assembler☆88Apr 10, 2024Updated 2 years ago
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆272Oct 13, 2022Updated 3 years ago
- k-mer based assembly evaluation☆351Jul 6, 2026Updated 2 weeks ago
- De novo genome assembler for long uncorrected reads☆232Nov 15, 2023Updated 2 years ago
- Fast and accurately polish the genome generated by long reads.☆243Jan 9, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Mabs, a genome assembly tool that optimizes parameters of Hifiasm and Flye☆37Apr 20, 2026Updated 3 months ago
- Sequence-independent identification and removal of adapters/systemic contamination in shotgun sequencing data. https://doi.org/10.1093/bi…☆19Apr 4, 2023Updated 3 years ago
- A tool for recovering synteny blocks from multiple alignment☆33Oct 18, 2021Updated 4 years ago
- ☆278Jun 26, 2025Updated last year
- Assembler for raw de novo genome assembly of long uncorrected reads.☆35Dec 11, 2019Updated 6 years ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Oct 5, 2021Updated 4 years ago
- software tools for haplotype assembly from sequence data☆232Feb 9, 2025Updated last year
- Chromosome-level scaffolding using multiple references☆169Sep 8, 2024Updated last year
- A snakemake pipeline to assembly, polishing, correction and quality check from Oxford nanopore reads.☆36Apr 4, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Lift-over alignments from variant-aware references☆34Mar 4, 2023Updated 3 years ago
- 🚝RAILS and 👞🔨Cobbler: Assembly Improvement by Long Sequence Scaffolding/Gap-filling☆27Apr 1, 2026Updated 3 months ago
- ✏️ Genome assembly polishing & SNV detection☆73Jun 12, 2026Updated last month
- A tool for removing redundant genomes from a set of assemblies☆84May 6, 2026Updated 2 months ago
- A tool for Racon polishing of miniasm assemblies☆81Mar 2, 2026Updated 4 months ago
- diploid SNV caller for error-prone reads☆212Apr 26, 2024Updated 2 years ago
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆56Feb 6, 2024Updated 2 years ago
- Haplotype-aware genome assembly toolkit☆30Jan 8, 2020Updated 6 years ago
- ⛓ Correct misassemblies using linked AND long reads☆64Mar 24, 2026Updated 4 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Feb 6, 2022Updated 4 years ago
- use long sequenced reads to close gaps in assemblies☆39Sep 4, 2018Updated 7 years ago
- A tool for evaluate long-read de novo assembly results☆51Aug 28, 2024Updated last year
- Unfazed by genomic variant phasing☆28May 26, 2024Updated 2 years ago
- Repeat-aware polishing genomes assembled using HiFi long reads☆105Apr 7, 2026Updated 3 months ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Apr 8, 2021Updated 5 years ago
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆128Jun 18, 2026Updated last month