bede / kindelLinks
Indel-aware consensus for aligned BAM
☆21Updated 2 months ago
Alternatives and similar repositories for kindel
Users that are interested in kindel are comparing it to the libraries listed below
Sorting:
- Scaffolding with assembly likelihood optimization☆22Updated 4 years ago
- ☆15Updated 4 years ago
- Paint genomes with taxa-specific k-mer probabilities☆15Updated 3 years ago
- comparative genome dot plot viewer☆9Updated 6 years ago
- ☆32Updated 2 years ago
- mSWEEP High-resolution sweep metagenomics using fast probabilistic inference☆14Updated 7 months ago
- Extracts subgraphs or components from a graph in GFA format☆23Updated 6 months ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- ☆12Updated last month
- syncmer graphs, and perhaps other sorts of sequence graphs☆20Updated 2 months ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 7 years ago
- recompute GFA link overlaps☆25Updated 2 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- Rapid competitive read demulitplexer. Made with tries.☆23Updated 2 weeks ago
- A comparative genome scaffolding tool☆17Updated 6 years ago
- De novo VIral Genome Annotator☆21Updated 8 months ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 4 years ago
- deSAMBA: fast and accurate classification of metagenomics long reads with sparse approximate matches☆10Updated last year
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated last year
- base-accurate DNA sequence alignments using edlib and mashmap2☆33Updated 4 years ago
- ☆20Updated last year
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated 11 months ago
- Variant call adjudication☆16Updated 11 months ago
- Annotated Genome Optimization Using Transcriptome Information☆19Updated 5 years ago
- ☆28Updated last month
- Hidden Markov Model based Copy number caller☆20Updated 7 months ago
- Scaffolding with Ultralong Reads☆15Updated 4 years ago
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- Genomic Assemblies Merger for NGS☆26Updated last year
- Scripts to split reference and run mummer in parallel on an SGE cluster☆11Updated 8 years ago