Alternatives and similar repositories for kindel:

Users that are interested in kindel are comparing it to the libraries listed below

• scwatts / genome_painter
  Paint genomes with taxa-specific k-mer probabilities
  ☆15Updated 2 years ago
• medvedevgroup / BubbZ
  ☆15Updated 4 years ago
• iqbal-lab-org / make_prg
  Code to create a PRG from a Multiple Sequence Alignment file
  ☆22Updated 9 months ago
• jfass / apc
  (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join
  ☆11Updated 3 years ago
• karel-brinda / samsift
  SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.
  ☆23Updated 6 years ago
• fawaz-dabbaghieh / gfa_subgraphs
  Extracts subgraphs or components from a graph in GFA format
  ☆23Updated 2 months ago
• atifrahman / SWALO
  Scaffolding with assembly likelihood optimization
  ☆20Updated 4 years ago
• vice87 / gam-ngs
  Genomic Assemblies Merger for NGS
  ☆26Updated last year
• kdm9 / axe
  Rapid competitive read demulitplexer. Made with tries.
  ☆23Updated last year
• dfguan / cgplot
  comparative genome dot plot viewer
  ☆9Updated 5 years ago
• bcgsc / ntHits
  Identifying repeats in high-throughput sequencing data
  ☆15Updated 9 months ago
• PacificBiosciences / actc
  Align subreads to ccs reads
  ☆13Updated last year
• ekg / edyeet
  base-accurate DNA sequence alignments using edlib and mashmap2
  ☆33Updated 3 years ago
• GlobalPathogenAnalysisService / read-it-and-keep
  Read contamination removal
  ☆24Updated last year
• sanger-pathogens / panito
  Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment
  ☆16Updated 6 years ago
• svm-zhang / AGOUTI
  Annotated Genome Optimization Using Transcriptome Information
  ☆19Updated 4 years ago
• gregorykucherov / spaced-seeds-for-metagenomics
  ☆14Updated 9 years ago
• SR-Martin / alvis
  ☆19Updated last year
• mchaisso / mcutils
  ☆12Updated 3 years ago
• bcgsc / ntLink
  Minimizer-based assembly scaffolding and mapping using long reads
  ☆35Updated 3 months ago
• mahulchak / mscaffolder
  A comparative genome scaffolding tool
  ☆17Updated 6 years ago
• EvolBioInf / fur
  Find Unique genomic Regions
  ☆29Updated 3 weeks ago
• fritzsedlazeck / nibSV
  Kmer based genotyper for short reads.
  ☆23Updated 3 years ago
• Adamtaranto / blast-besties
  Rapid discovery of reciprocal best blast pairs.
  ☆10Updated 2 months ago
• kehrlab / PopIns2
  Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs
  ☆24Updated 9 months ago
• tseemann / ekidna
  Assembly based core genome SNP alignments for bacteria
  ☆25Updated 5 years ago
• PROBIC / mSWEEP
  mSWEEP High-resolution sweep metagenomics using fast probabilistic inference
  ☆14Updated 3 months ago
• ChaissonLab / hmcnc
  Hidden Markov Model based Copy number caller
  ☆20Updated 3 months ago
• lh3 / sdust
  Symmetric DUST for finding low-complexity regions in DNA sequences
  ☆34Updated last year
• hitbc / deSAMBA
  deSAMBA: fast and accurate classification of metagenomics long reads with sparse approximate matches
  ☆10Updated 8 months ago