Alternatives and similar repositories for smartie-sv

Users that are interested in smartie-sv are comparing it to the libraries listed below

• shingocat / lrscaf
  TGS scaffolding
  ☆46Updated 3 years ago
• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆46Updated 4 years ago
• JanaSperschneider / FindTelomeres
  A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files
  ☆34Updated 3 years ago
• CAFS-bioinformatics / LR_Gapcloser
  use long sequenced reads to close gaps in assemblies
  ☆37Updated 6 years ago
• schneebergerlab / AMPRIL-genomes
  scripts for the project of seven thaliana genomes assembly
  ☆39Updated 4 years ago
• HuffordLab / GenomeQC
  ☆32Updated 4 years ago
• schatzlab / pseudohaploid
  Create a pseudohaploid assembly from a partially resolved diploid assembly
  ☆32Updated 5 years ago
• vgteam / giraffe-sv-paper
  ☆42Updated last year
• AppliedBioinformatics / runBNG
  An easy way to run BioNano genomic analysis
  ☆27Updated 4 years ago
• baozg / phased-assembly-check
  ☆30Updated 5 months ago
• lh3 / calN50
  Compute N50/NG50 and auN/auNG
  ☆32Updated last year
• shilpagarg / DipAsm
  ☆76Updated 5 years ago
• HullUni-bioinformatics / TE-search-tools
  Python wrappers for programs that search for transposable elements
  ☆19Updated 8 years ago
• obenno / ShinySyn
  A shiny application to visualize MCscan result
  ☆36Updated 2 years ago
• sjteresi / TE_Density
  Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…
  ☆33Updated 8 months ago
• josephryan / estimate_genome_size.pl
  Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish
  ☆57Updated 2 years ago
• eswlab / orphan-prediction
  methods for orphan gene prediction paper optimization
  ☆25Updated 3 years ago
• srividya22 / geneLift
  Gene model transfer from closely related reference genomes using cDNA alignments
  ☆10Updated 4 years ago
• ListerLab / TEPID
  Transposable element polymorphism identification
  ☆33Updated 4 years ago
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 5 years ago
• Zhuxitong / ppsPCP
  A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline
  ☆27Updated 4 years ago
• tsackton / linked-selection
  ☆24Updated 8 years ago
• vgteam / sv-genotyping-paper
  ☆30Updated 5 years ago
• mrvollger / NucFreq
  ☆35Updated last year
• mrvollger / SDA
  Segmental Duplication Assembler (SDA).
  ☆44Updated 2 years ago
• Nextomics / nextsv
  ☆34Updated last year
• PacificBiosciences / pbipa
  Improved Phased Assembler
  ☆28Updated 3 years ago
• zy-optimistic / GAEP
  A genome assembly assessment pipeline.
  ☆37Updated last year
• mapleforest / HaploMerger2
  ☆44Updated 8 years ago
• ChongLab / Inspector
  A tool for evaluate long-read de novo assembly results
  ☆47Updated 9 months ago