zeeev / smartie-sv
calling SVs from Blasr contig level alignments
☆54Updated 6 years ago
Alternatives and similar repositories for smartie-sv:
Users that are interested in smartie-sv are comparing it to the libraries listed below
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆32Updated 2 years ago
- finshingTool☆55Updated 8 years ago
- ☆76Updated 4 years ago
- TGS scaffolding☆46Updated 3 years ago
- ☆32Updated 4 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 3 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆56Updated 2 years ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆46Updated 11 months ago
- ☆31Updated 5 years ago
- use long sequenced reads to close gaps in assemblies☆36Updated 6 years ago
- ☆43Updated 8 years ago
- A tool for evaluate long-read de novo assembly results☆42Updated 5 months ago
- Python wrappers for programs that search for transposable elements☆19Updated 8 years ago
- ☆42Updated 8 months ago
- assembly evaluation tool☆34Updated 2 years ago
- A genome assembly assessment pipeline.☆37Updated last year
- Compute N50/NG50 and auN/auNG☆31Updated last year
- Identification of transposable element families from pangenome polymorphisms☆43Updated 5 months ago
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- A software to assemble chloroplast and mitochodrial genomes using PacBio data☆37Updated 4 years ago
- ☆29Updated 3 weeks ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆33Updated last year
- Plant genome assembly and annotation pipeline using snakemake☆37Updated last year
- CLfinder-OrthNet, a pipeline to encode orthologs from multiple genomes and their evolutionary history into networks (OrthNets) based on c…☆9Updated 2 years ago
- ☆34Updated last year
- Transposable element polymorphism identification☆33Updated 4 years ago
- ☆74Updated 3 months ago
- Custom tools to 'facilitate' BioNano Genomics data analysis☆33Updated 6 years ago
- Genome Annotation Pipeline☆35Updated 5 months ago
- A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads☆37Updated 7 months ago