zeeev / smartie-sv
calling SVs from Blasr contig level alignments
☆54Updated 7 years ago
Alternatives and similar repositories for smartie-sv:
Users that are interested in smartie-sv are comparing it to the libraries listed below
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆33Updated 2 years ago
- ☆76Updated 4 years ago
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- TGS scaffolding☆46Updated 3 years ago
- ☆32Updated 4 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- use long sequenced reads to close gaps in assemblies☆37Updated 6 years ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- ☆42Updated 11 months ago
- ☆43Updated 8 years ago
- Compute N50/NG50 and auN/auNG☆31Updated last year
- ☆29Updated 4 months ago
- An easy way to run BioNano genomic analysis☆27Updated 4 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆56Updated 2 years ago
- ☆30Updated 5 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆55Updated 2 years ago
- Likelihood-based Selective Sweep Detection☆37Updated last year
- Plant genome assembly and annotation pipeline using snakemake☆44Updated last year
- finshingTool☆55Updated 8 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆33Updated last year
- Segmental Duplication Assembler (SDA).☆44Updated last year
- A shiny application to visualize MCscan result☆36Updated 2 years ago
- A program to call variants from genome alignment☆80Updated last week
- Variant annotation and merging pipeline☆33Updated last month
- Python wrappers for programs that search for transposable elements☆19Updated 8 years ago
- A genome assembly assessment pipeline.☆37Updated last year
- ☆24Updated 7 years ago
- Transposable element polymorphism identification☆33Updated 4 years ago
- ☆36Updated last year