Alternatives and similar repositories for biser:

Users that are interested in biser are comparing it to the libraries listed below

• JanaSperschneider / FindTelomeres
  A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files
  ☆33Updated 2 years ago
• daewoooo / SVbyEye
  ☆76Updated 3 weeks ago
• baozg / phased-assembly-check
  ☆29Updated 2 months ago
• JiaoLab2021 / EVG
  A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads
  ☆37Updated 8 months ago
• phasegenomics / juicebox_scripts
  A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats
  ☆65Updated 3 years ago
• CAFS-bioinformatics / LR_Gapcloser
  use long sequenced reads to close gaps in assemblies
  ☆37Updated 6 years ago
• shingocat / lrscaf
  TGS scaffolding
  ☆46Updated 3 years ago
• mapleforest / HaploMerger2
  ☆43Updated 8 years ago
• ChongLab / Inspector
  A tool for evaluate long-read de novo assembly results
  ☆43Updated 6 months ago
• shilpagarg / DipAsm
  ☆76Updated 4 years ago
• PacificBiosciences / jasmine
  Predict 5mC in PacBio HiFi reads
  ☆1Updated last month
• yeeus / GCI
  A program for assessing the T2T genome continuity
  ☆69Updated 2 weeks ago
• JiaoLaboratory / CRAQ
  Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement
  ☆58Updated 2 months ago
• piosierra / pantera
  Identification of transposable element families from pangenome polymorphisms
  ☆44Updated last week
• mahulchak / svmu
  A program to call variants from genome alignment
  ☆79Updated last year
• schneebergerlab / AMPRIL-genomes
  scripts for the project of seven thaliana genomes assembly
  ☆38Updated 3 years ago
• obenno / ShinySyn
  A shiny application to visualize MCscan result
  ☆35Updated 2 years ago
• zeeev / smartie-sv
  calling SVs from Blasr contig level alignments
  ☆54Updated 7 years ago
• TF-Chan-Lab / panGraphViewer
  Show pangenome graphs in an easy way
  ☆55Updated 2 years ago
• wjian8 / psvcp_v1.01
  Pan-genome Construction and Population Structure Variation Calling pipeline
  ☆38Updated 6 months ago
• zy-optimistic / GAEP
  A genome assembly assessment pipeline.
  ☆37Updated last year
• JiaoLab2021 / varigraph
  An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes
  ☆21Updated 2 weeks ago
• Gaius-Augustus / TSEBRA
  TSEBRA: Transcript Selector for BRAKER
  ☆47Updated 4 months ago
• baozg / assembly-annotation-pipeline
  Plant genome assembly and annotation pipeline using snakemake
  ☆42Updated last year
• PacificBiosciences / HiFiCNV
  Copy number variant caller and depth visualization utility for PacBio HiFi reads
  ☆40Updated 4 months ago
• ablab / VerityMap
  ☆34Updated 2 years ago
• mrvollger / NucFreq
  ☆35Updated last year
• c-zhou / oatk
  A organelle de novo genome assembly toolkit
  ☆55Updated 3 weeks ago
• ShiuLab / PseudogenePipeline
  ☆39Updated last year
• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆46Updated 4 years ago