0xTCG / biserLinks
A fast tool for detecting and decomposing segmental duplications in genome assemblies
☆55Updated 6 months ago
Alternatives and similar repositories for biser
Users that are interested in biser are comparing it to the libraries listed below
Sorting:
- A organelle de novo genome assembly toolkit☆73Updated 11 months ago
- RepeatIdentifier☆71Updated 10 months ago
- use long sequenced reads to close gaps in assemblies☆40Updated 7 years ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆68Updated 4 years ago
- Identification of transposable element families from pangenome polymorphisms☆55Updated 8 months ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆36Updated 3 years ago
- Call select base modifications in PacBio HiFi reads☆15Updated 2 months ago
- ☆32Updated last year
- ☆45Updated 9 years ago
- C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on Pore-C, HiFi-C/CiFi or Hi-C.☆85Updated 2 weeks ago
- ☆78Updated 5 years ago
- A program for assessing the T2T genome continuity☆92Updated last month
- A program to call variants from genome alignment☆81Updated 9 months ago
- TSEBRA: Transcript Selector for BRAKER☆49Updated 2 months ago
- ☆41Updated 2 years ago
- A tool for evaluate long-read de novo assembly results☆48Updated last year
- Draw a dot plot from a paf alignment☆38Updated 4 months ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆37Updated last year
- Simple pileup-based variant caller☆95Updated 9 months ago
- Show pangenome graphs in an easy way☆58Updated 6 months ago
- SRF: Satellite Repeat Finder☆101Updated 2 years ago
- ☆21Updated last year
- An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes☆44Updated 4 months ago
- TGS scaffolding☆47Updated 4 years ago
- Plant genome assembly and annotation pipeline using snakemake☆52Updated 8 months ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆50Updated 2 months ago
- Splitting of sequence reads by internal adapter sequence search☆51Updated 2 years ago
- Tools for improving the sensitivity and specificity of genome alignments☆58Updated 2 years ago
- ☆44Updated 6 months ago
- HiCAT new project☆31Updated 8 months ago