0xTCG / biser
A fast tool for detecting and decomposing segmental duplications in genome assemblies
☆46Updated last year
Alternatives and similar repositories for biser:
Users that are interested in biser are comparing it to the libraries listed below
- ☆75Updated 4 months ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆32Updated 2 years ago
- ☆29Updated last month
- A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads☆37Updated 7 months ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆71Updated 2 months ago
- ☆43Updated 8 years ago
- A shiny application to visualize MCscan result☆34Updated 2 years ago
- calling SVs from Blasr contig level alignments☆54Updated 6 years ago
- ☆76Updated 4 years ago
- use long sequenced reads to close gaps in assemblies☆36Updated 6 years ago
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆58Updated last month
- Pan-genome Construction and Population Structure Variation Calling pipeline☆37Updated 5 months ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆65Updated 3 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 3 years ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆40Updated 3 months ago
- ☆38Updated last year
- ☆42Updated 9 months ago
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆52Updated last year
- Tool for globally phasing diploid assembly graphs with orthogonal data☆39Updated 2 months ago
- TGS scaffolding☆46Updated 3 years ago
- A tool for evaluate long-read de novo assembly results☆43Updated 5 months ago
- ☆34Updated last year
- A organelle de novo genome assembly toolkit☆53Updated 2 months ago
- Genome Annotation Pipeline☆35Updated 5 months ago
- TSEBRA: Transcript Selector for BRAKER☆47Updated 3 months ago
- SRY: an effective method for sorting long-read of sex-limited (Y or W) chromosome.☆18Updated last year
- Show pangenome graphs in an easy way☆54Updated 2 years ago
- A program to call variants from genome alignment☆78Updated 10 months ago
- ☆35Updated 11 months ago