cmdcolin / mafviewer
A JBrowse plugin to view multiple alignment format (MAF) files
☆26Updated last year
Alternatives and similar repositories for mafviewer:
Users that are interested in mafviewer are comparing it to the libraries listed below
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆31Updated 5 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- A transposition caller.☆10Updated last year
- An insertion caller for Illumina paired-end WGS data.☆23Updated 7 months ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- ☆23Updated 5 years ago
- Archived version 1.0.2☆16Updated 5 years ago
- Genotyping of segregating mobile elements insertions☆19Updated 3 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆14Updated 3 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆48Updated 5 years ago
- interactive Multi Objective K-mer Analysis☆23Updated 2 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, a…☆15Updated last year
- Python package and routines for merging VCF files☆29Updated 3 years ago
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18Updated 4 years ago
- Human pan-genome analysis pipeline☆29Updated 4 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆20Updated 9 months ago
- Method to optimally select samples for validation and resequencing☆27Updated 3 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated 9 months ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆23Updated 3 years ago
- Adapters for trimming☆30Updated 6 years ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Updated 6 years ago
- Scripts to reproduce TrioBinning manuscript☆17Updated 4 years ago
- toolkit to process gtf files☆17Updated 3 years ago
- This is the Haplotypo repository☆20Updated 9 months ago
- Dot: An interactive dot plot viewer for comparative genomics☆32Updated last year
- Simplify snpEff annotations for interesting cases☆21Updated 6 years ago
- Prioritize structural variants based on CADD scores☆28Updated 4 years ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆22Updated 2 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago