xjtu-omics / SVisionLinks
Detecting genome structural variants with deep learning in single molecule sequencing
☆113Updated 7 months ago
Alternatives and similar repositories for SVision
Users that are interested in SVision are comparing it to the libraries listed below
Sorting:
- Tandem repeat genotyping and visualization from PacBio HiFi data☆127Updated last week
- Collection of tools for the analysis of CpG data☆97Updated 4 months ago
- Pangenome-based genome inference☆149Updated this week
- Stratification BED files from the Global Alliance for Genomics and Health (GA4GH) Benchmarking Team and the Genome in a Bottle Consortium…☆82Updated 3 years ago
- Fast and accurate coordinate conversion between assemblies☆117Updated last month
- Phased assembly variant caller☆129Updated 11 months ago
- ☆47Updated 2 months ago
- A complete diploid human genome☆137Updated last month
- A tool for somatic structural variant calling using long reads☆150Updated 3 weeks ago
- Variant calling tool for long-read sequencing data☆113Updated 7 months ago
- Research release basecalling models and configurations☆116Updated 5 months ago
- Application of pan-genome for population☆115Updated 3 weeks ago
- PBSIM3: a simulator for all types of PacBio and ONT long reads☆84Updated 6 months ago
- ☆119Updated 2 weeks ago
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆117Updated 4 months ago
- ☆71Updated 5 years ago
- DNA 5mC methylation detection from Dorado or Guppy basecalled Oxford Nanopore reads☆55Updated 8 months ago
- TransposonUltimate - a holistic set of tools for transposon identification☆84Updated 3 years ago
- A list of software for pangenomics☆142Updated 2 weeks ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆160Updated 8 months ago
- accurate LiftOver tool for new genome assemblies☆137Updated last year
- Toolkit for calling structural variants using short or long reads☆111Updated last month
- Wally: Visualization of aligned sequencing reads and contigs☆120Updated last month
- An ultra-fast and efficient genomic tool for coverage calculation☆161Updated 7 months ago
- Structural variant caller for real-time long-read sequencing data☆57Updated 2 years ago
- Dfam Transposable Element Tools Docker container.☆101Updated 2 weeks ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆104Updated 4 years ago
- A tool for profiling long STRs from short reads☆101Updated 4 years ago
- Constructing a pangenome gene graph☆198Updated 3 months ago
- A novel genome assembly pipeline based on deep learning☆66Updated 11 months ago