SJTU-CGM / HUPANLinks
Human pan-genome analysis pipeline
☆30Updated 5 years ago
Alternatives and similar repositories for HUPAN
Users that are interested in HUPAN are comparing it to the libraries listed below
Sorting:
- Genotyping of segregating mobile elements insertions☆19Updated 3 years ago
- A JBrowse plugin to view multiple alignment format (MAF) files☆26Updated last year
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- Method to optimally select samples for validation and resequencing☆28Updated 4 years ago
- A method for measuring chromosome-specific telomere length from long reads☆21Updated last year
- ☆30Updated 5 years ago
- A module for improving the insertion sequences of structural variant calls☆30Updated 4 years ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 4 years ago
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆22Updated 2 years ago
- Haplotype and population structure inference using neural networks.☆27Updated 7 months ago
- Scripts to reproduce TrioBinning manuscript☆17Updated 5 years ago
- Convert HAL to VG☆22Updated 11 months ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆36Updated 2 years ago
- ☆28Updated 2 years ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆23Updated last year
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆20Updated last year
- ☆21Updated 4 months ago
- Consensus genome annotation using OMA☆26Updated 3 weeks ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 7 months ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 4 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆43Updated last month
- Structural variant merging tool☆52Updated 10 months ago
- interactive Multi Objective K-mer Analysis☆23Updated 2 years ago
- Combine structural variation outputs from long sequencing reads into a superior call set☆17Updated last year
- This is the Haplotypo repository☆20Updated last year
- This toolkit deals with GEnomic sequence and genome structure ANnotation files between inbreeding lines and species.☆45Updated 2 years ago
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆56Updated 6 months ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago