SJTU-CGM / HUPANLinks
Human pan-genome analysis pipeline
☆30Updated 5 years ago
Alternatives and similar repositories for HUPAN
Users that are interested in HUPAN are comparing it to the libraries listed below
Sorting:
- ☆30Updated 5 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- Genotyping of segregating mobile elements insertions☆19Updated 3 years ago
- Structural variant caller☆54Updated 3 years ago
- A pipeline for isoseq☆23Updated 7 years ago
- toolkit to process gtf files☆17Updated 3 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 9 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- ☆51Updated 5 years ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆34Updated 6 years ago
- Structural variant merging tool☆52Updated 10 months ago
- microRNA PREdiction From small RNA-seq data☆29Updated 7 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆20Updated last year
- A JBrowse plugin to view multiple alignment format (MAF) files☆26Updated last year
- Scripts to reproduce TrioBinning manuscript☆17Updated 5 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆37Updated 2 years ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 4 years ago
- Method to optimally select samples for validation and resequencing☆27Updated 4 years ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Updated 7 years ago
- A scaffold assembling pipeline for stLFR reads.☆15Updated 4 years ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆24Updated 3 years ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- An insertion caller for Illumina paired-end WGS data.☆23Updated 10 months ago
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆22Updated 2 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- ☆28Updated 2 years ago
- Dot: An interactive dot plot viewer for comparative genomics☆33Updated 2 years ago
- ☆19Updated 2 years ago
- A new tool to infer sex from massively parallel sequencing data.☆17Updated last month
- Variant annotation and merging pipeline☆36Updated 3 weeks ago