Alternatives and similar repositories for triobinningScripts:

Users that are interested in triobinningScripts are comparing it to the libraries listed below

• vgteam / sv-genotyping-paper
  ☆30Updated 5 years ago
• PacificBiosciences / pbipa
  Improved Phased Assembler
  ☆28Updated 3 years ago
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 5 years ago
• EichlerLab / svpop
  Variant annotation and merging pipeline
  ☆33Updated 3 weeks ago
• KolmogorovLab / hapdiff
  SV calling for diploid assemblies
  ☆26Updated last year
• eswlab / orphan-prediction
  methods for orphan gene prediction paper optimization
  ☆25Updated 3 years ago
• llecompte / SVJedi
  SV genotyping with long reads
  ☆40Updated last year
• jkimlab / mySyntenyPortal
  A stand-alone application for constructing websites for visualizing and browsing synteny blocks
  ☆18Updated 4 years ago
• lh3 / panmask
  Easy genomic regions for short-read variant calling
  ☆13Updated 2 months ago
• farhangus / Sniffles2_plot
  ☆30Updated 8 months ago
• matted-zz / genome_coverage_plotter
  Simple script to generate whole-genome coverage plots
  ☆18Updated 9 years ago
• ndierckx / combiSV
  Combine structural variation outputs from long sequencing reads into a superior call set
  ☆14Updated 10 months ago
• LeanQ / SPLITREADER
  Split-read pipeline for the identification of non-reference TE insertions with TSDs
  ☆25Updated 4 years ago
• bergmanlab / TELR
  TELR is a fast non-reference transposable element detector from long read sequencing data.
  ☆33Updated last year
• AppliedBioinformatics / runBNG
  An easy way to run BioNano genomic analysis
  ☆27Updated 4 years ago
• Nextomics / pipeline-for-isoseq
  A pipeline for isoseq
  ☆23Updated 6 years ago
• vpc-ccg / sedef
  Identification of segmental duplications in the genome
  ☆27Updated 3 years ago
• monarch-initiative / SvAnna
  Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing
  ☆36Updated 9 months ago
• PacificBiosciences / HiFiCNV
  Copy number variant caller and depth visualization utility for PacBio HiFi reads
  ☆41Updated 6 months ago
• lh3 / calN50
  Compute N50/NG50 and auN/auNG
  ☆31Updated last year
• Nextomics / nextsv
  ☆34Updated last year
• cmdoret / tinycov
  Command line tool to plot genomic coverage from a BAM file
  ☆13Updated 2 years ago
• JialiUMassWengLab / TEMP
  TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…
  ☆22Updated 7 years ago
• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆46Updated 4 years ago
• DrosophilaGenomeEvolution / TrEMOLO
  Transposable Elements MOvement detection using LOng reads
  ☆21Updated 4 months ago
• mkirsche / Iris
  A module for improving the insertion sequences of structural variant calls
  ☆30Updated 3 years ago
• Xinglab / TideHunter
  TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain
  ☆20Updated 10 months ago
• clemgoub / rm2gff3
  Convert RepeatMasker ".out" file into a gff3 with colors!!!
  ☆21Updated 4 years ago
• PacificBiosciences / apps-scripts
  Miscellaneous scripts for applications of PacBio systems
  ☆27Updated 3 years ago
• zeeev / smartie-sv
  calling SVs from Blasr contig level alignments
  ☆54Updated 7 years ago