skoren / triobinningScriptsLinks
Scripts to reproduce TrioBinning manuscript
☆17Updated 5 years ago
Alternatives and similar repositories for triobinningScripts
Users that are interested in triobinningScripts are comparing it to the libraries listed below
Sorting:
- ☆31Updated 5 years ago
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18Updated 4 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆21Updated 3 years ago
- A module for improving the insertion sequences of structural variant calls☆32Updated 4 years ago
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Updated 3 years ago
- Integrate multiple genome assemblies into a pangenome graph☆35Updated 3 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- Yet another Hi-C scaffolding tool☆22Updated last year
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆35Updated 2 years ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 5 years ago
- Visualising discordant reads☆15Updated 10 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Method to optimally select samples for validation and resequencing☆29Updated 4 years ago
- ☆31Updated last year
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆22Updated 5 years ago
- ☆29Updated 2 years ago
- ☆43Updated last year
- methods for orphan gene prediction paper optimization☆25Updated 3 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆52Updated 8 months ago
- ☆36Updated last year
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- Variant annotation and merging pipeline☆39Updated 3 months ago
- Haplotype and population structure inference using neural networks.☆27Updated 11 months ago
- A tool for recovering synteny blocks from multiple alignment☆32Updated 4 years ago
- SV calling for diploid assemblies☆29Updated last year
- Combine structural variation outputs from long sequencing reads into a superior call set☆18Updated 3 months ago
- ☆26Updated 9 months ago
- A method for measuring chromosome-specific telomere length from long reads☆22Updated last year