skoren / triobinningScripts

Related projects ⓘ

Alternatives and complementary repositories for triobinningScripts

• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 4 years ago
• vgteam / sv-genotyping-paper
  ☆31Updated 4 years ago
• EichlerLab / svpop
  Variant annotation and merging pipeline
  ☆29Updated 3 weeks ago
• farhangus / Sniffles2_plot
  ☆27Updated 3 months ago
• PacificBiosciences / pbipa
  Improved Phased Assembler
  ☆28Updated 2 years ago
• JialiUMassWengLab / TEMP
  TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…
  ☆21Updated 7 years ago
• jkimlab / mySyntenyPortal
  A stand-alone application for constructing websites for visualizing and browsing synteny blocks
  ☆18Updated 3 years ago
• evotools / nf-LO
  A Nextflow workflow to generate lift over files for any pair of genomes
  ☆54Updated last week
• vpc-ccg / sedef
  Identification of segmental duplications in the genome
  ☆26Updated 2 years ago
• Nextomics / nextsv
  ☆33Updated 7 months ago
• llecompte / SVJedi
  SV genotyping with long reads
  ☆40Updated last year
• zeeev / smartie-sv
  calling SVs from Blasr contig level alignments
  ☆53Updated 6 years ago
• AnimalGenomicsETH / bovine-graphs
  Integrate multiple genome assemblies into a pangenome graph
  ☆32Updated 2 years ago
• adamewing / tldr
  Identify and annotate TE-mediated insertions in long-read sequence data
  ☆40Updated last year
• DrosophilaGenomeEvolution / TrEMOLO
  Transposable Elements MOvement detection using LOng reads
  ☆19Updated this week
• maickrau / ribotin
  ☆30Updated 2 weeks ago
• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆45Updated 3 years ago
• EichlerLab / smrtsv2
  Structural variant caller
  ☆54Updated 2 years ago
• mkirsche / Iris
  A module for improving the insertion sequences of structural variant calls
  ☆29Updated 3 years ago
• lh3 / calN50
  Compute N50/NG50 and auN/auNG
  ☆31Updated last year
• HuffordLab / GenomeQC
  ☆32Updated 3 years ago
• schneebergerlab / AMPRIL-genomes
  scripts for the project of seven thaliana genomes assembly
  ☆38Updated 3 years ago
• ndierckx / combiSV
  Combine structural variation outputs from long sequencing reads into a superior call set
  ☆13Updated 5 months ago
• bergmanlab / TELR
  TELR is a fast non-reference transposable element detector from long read sequencing data.
  ☆32Updated last year
• AppliedBioinformatics / runBNG
  An easy way to run BioNano genomic analysis
  ☆27Updated 3 years ago
• vgteam / giraffe-sv-paper
  ☆41Updated 6 months ago
• LeanQ / SPLITREADER
  Split-read pipeline for the identification of non-reference TE insertions with TSDs
  ☆24Updated 4 years ago
• cmdoret / tinycov
  Command line tool to plot genomic coverage from a BAM file
  ☆13Updated last year
• sanger-tol / yahs
  Yet another Hi-C scaffolding tool
  ☆19Updated last month