skoren / triobinningScriptsLinks
Scripts to reproduce TrioBinning manuscript
☆17Updated 5 years ago
Alternatives and similar repositories for triobinningScripts
Users that are interested in triobinningScripts are comparing it to the libraries listed below
Sorting:
- ☆30Updated 5 years ago
- Variant annotation and merging pipeline☆36Updated 3 weeks ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18Updated 4 years ago
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- ☆34Updated last year
- SV calling for diploid assemblies☆27Updated last year
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- Easy genomic regions for short-read variant calling☆15Updated last week
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 4 years ago
- Combine structural variation outputs from long sequencing reads into a superior call set☆15Updated last year
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆21Updated 4 years ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 4 years ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆20Updated last year
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆33Updated last year
- ☆26Updated 4 months ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆25Updated last month
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆12Updated 6 years ago
- Method to optimally select samples for validation and resequencing☆27Updated 4 years ago
- Genome assembly soft-masking using Red (REpeat Detector)☆17Updated 6 years ago
- Snakemake pipeline to analyze transposable element 'omics data.☆23Updated this week
- methods for orphan gene prediction paper optimization☆25Updated 3 years ago
- Population-wide Deletion Calling☆35Updated 2 months ago
- ☆30Updated 10 months ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 4 years ago
- ☆17Updated last year
- Yet another Hi-C scaffolding tool☆20Updated 8 months ago
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆27Updated 4 years ago