EichlerLab / smrtsv2Links
Structural variant caller
☆55Updated 3 years ago
Alternatives and similar repositories for smrtsv2
Users that are interested in smrtsv2 are comparing it to the libraries listed below
Sorting:
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- ☆83Updated 8 months ago
- Variant annotation and merging pipeline☆39Updated 3 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 6 years ago
- SV genotyping with long reads☆40Updated 2 years ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆44Updated last year
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- ☆51Updated 6 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 10 months ago
- ☆36Updated last year
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆39Updated 2 years ago
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- Working space for the GIAB TR benchmarking project☆23Updated last year
- A battery of methylation tools for PacBio HiFi reads☆43Updated last week
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆52Updated 8 months ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- ☆79Updated 5 years ago
- ☆49Updated last year
- A Nextflow workflow to generate lift over files for any pair of genomes☆69Updated 4 months ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- Structural variant (SV) analysis tools☆39Updated last year
- ☆30Updated 4 years ago
- Structural variant merging tool☆55Updated last year
- a hidden Markov model to infer simple repeats from genome sequences☆37Updated 4 years ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆50Updated 8 months ago
- perSVade: personalized Structural Variation detection☆40Updated 2 months ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 5 years ago
- A pipeline for isoseq☆23Updated 7 years ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆38Updated last year