EichlerLab / smrtsv2Links
Structural variant caller
☆55Updated 3 years ago
Alternatives and similar repositories for smrtsv2
Users that are interested in smrtsv2 are comparing it to the libraries listed below
Sorting:
- ☆81Updated 6 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- SV genotyping with long reads☆39Updated 2 years ago
- Variant annotation and merging pipeline☆39Updated last month
- ☆51Updated 6 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- ☆36Updated last year
- Structural variant merging tool☆54Updated last year
- A Nextflow workflow to generate lift over files for any pair of genomes☆68Updated 2 months ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 8 months ago
- Working space for the GIAB TR benchmarking project☆21Updated 10 months ago
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- Methylation Phasing for Nanopore Sequencing☆48Updated 2 years ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆49Updated 6 months ago
- ☆30Updated 4 years ago
- ☆48Updated last year
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆37Updated last year
- Algorithm to detect germline and de novo transposon insertions☆30Updated last month
- ☆78Updated 5 years ago
- Joint structural variant and copy number variant caller for HiFi sequencing data☆60Updated last week
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Updated 2 years ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆51Updated 4 years ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆43Updated 10 months ago
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- ☆31Updated last year
- ☆22Updated 4 years ago
- Transposable element polymorphism identification☆34Updated 5 years ago