EichlerLab / smrtsv2

Related projects ⓘ

Alternatives and complementary repositories for smrtsv2

• llecompte / SVJedi
  SV genotyping with long reads
  ☆40Updated last year
• lh3 / etrf
  Exact Tandem Repeat Finder (not a TRF replacement)
  ☆45Updated 5 years ago
• MeHelmy / princess
  ☆79Updated 6 months ago
• timplab / nanopore-methylation-utilities
  ☆29Updated 3 years ago
• tanghaibao / allhic
  Genome scaffolding based on HiC data in heterozygous and high ploidy genomes
  ☆59Updated 3 years ago
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 4 years ago
• mrvollger / SDA
  Segmental Duplication Assembler (SDA).
  ☆44Updated last year
• mchowdh200 / samplot-ml
  ☆22Updated 3 years ago
• EichlerLab / svpop
  Variant annotation and merging pipeline
  ☆28Updated last week
• Nextomics / nextsv
  ☆33Updated 6 months ago
• wtsi-hpag / Scaff10X
  Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads
  ☆22Updated 2 years ago
• monarch-initiative / SvAnna
  Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing
  ☆33Updated 4 months ago
• shilpagarg / DipAsm
  ☆77Updated 4 years ago
• lbcb-sci / ra
  Assembler for raw de novo genome assembly of long uncorrected reads.
  ☆37Updated 4 years ago
• rrazaghi / modbamtools
  Set of tools to manipulate and visualize modified base bam files
  ☆48Updated 2 years ago
• evotools / nf-LO
  A Nextflow workflow to generate lift over files for any pair of genomes
  ☆54Updated 2 months ago
• lh3 / calN50
  Compute N50/NG50 and auN/auNG
  ☆31Updated last year
• zeeev / smartie-sv
  calling SVs from Blasr contig level alignments
  ☆53Updated 6 years ago
• PacificBiosciences / sv-benchmark
  Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data
  ☆47Updated 3 years ago
• jbelyeu / SV-plaudit
  Pipeline for structural variant image curation and analysis.
  ☆48Updated 2 years ago
• UCSC-nanopore-cgl / MarginPolish
  MarginPolish: Graph based assembly polishing
  ☆45Updated 3 years ago
• smehringer / SViper
  Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.
  ☆32Updated 2 years ago
• mcfrith / tandem-genotypes
  ☆45Updated 4 months ago
• DecodeGenetics / svimmer
  Structural variant merging tool
  ☆44Updated 2 months ago
• lh3 / htsbox
  My experimental tools on top of htslib. NOT OFFICIAL!!!
  ☆53Updated last year
• ListerLab / TEPID
  Transposable element polymorphism identification
  ☆32Updated 4 years ago
• AppliedBioinformatics / runBNG
  An easy way to run BioNano genomic analysis
  ☆27Updated 3 years ago
• zeeev / mergeSVcallers
  heuristics to merge structural variant calls in VCF format.
  ☆35Updated 8 years ago