EichlerLab / smrtsv2
Structural variant caller
☆54Updated 3 years ago
Alternatives and similar repositories for smrtsv2:
Users that are interested in smrtsv2 are comparing it to the libraries listed below
- Exact Tandem Repeat Finder (not a TRF replacement)☆47Updated 5 years ago
- ☆79Updated 9 months ago
- SV genotyping with long reads☆40Updated last year
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆56Updated last week
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆46Updated 4 years ago
- Variant annotation and merging pipeline☆31Updated last month
- ☆29Updated 4 years ago
- ☆22Updated 3 years ago
- Segmental Duplication Assembler (SDA).☆44Updated last year
- Error correction of ONT transcript reads☆59Updated last year
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆35Updated 7 months ago
- Working space for the GIAB TR benchmarking project☆21Updated 3 months ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Structural Variants Pipeline for Long Reads☆44Updated 6 years ago
- Set of tools to manipulate and visualize modified base bam files☆50Updated 2 years ago
- ☆51Updated 5 years ago
- ☆33Updated 10 months ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆42Updated 4 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Compute N50/NG50 and auN/auNG☆31Updated last year
- Structural variant merging tool☆49Updated 5 months ago
- Population-wide Deletion Calling☆35Updated 5 months ago
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 3 years ago
- calling SVs from Blasr contig level alignments☆54Updated 6 years ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆40Updated 3 months ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- Structural variant (SV) analysis tools☆35Updated 7 months ago