EichlerLab / smrtsv2Links
Structural variant caller
☆55Updated 3 years ago
Alternatives and similar repositories for smrtsv2
Users that are interested in smrtsv2 are comparing it to the libraries listed below
Sorting:
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- ☆81Updated 7 months ago
- SV genotyping with long reads☆39Updated 2 years ago
- ☆36Updated last year
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Variant annotation and merging pipeline☆39Updated 2 months ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- heuristics to merge structural variant calls in VCF format.☆38Updated 8 years ago
- ☆30Updated 4 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 9 months ago
- a hidden Markov model to infer simple repeats from genome sequences☆37Updated 4 years ago
- ☆51Updated 6 years ago
- Structural Variants Pipeline for Long Reads☆44Updated 7 years ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆38Updated 2 years ago
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- A pipeline for isoseq☆23Updated 7 years ago
- ☆48Updated last year
- Transposable element polymorphism identification☆34Updated 5 years ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆43Updated 11 months ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆52Updated 6 months ago
- Structural variant merging tool☆55Updated last year
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆68Updated 3 months ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆51Updated 4 years ago
- Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…☆49Updated 7 years ago
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- Pipeline for structural variation detection in cohorts☆51Updated 4 years ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆49Updated 7 months ago