ekg / edyeet
base-accurate DNA sequence alignments using edlib and mashmap2
☆33Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for edyeet
- ☆28Updated last year
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆34Updated 8 months ago
- Minimizer-based assembly scaffolding and mapping using long reads☆31Updated 3 weeks ago
- recompute GFA link overlaps☆25Updated 2 years ago
- A module for improving the insertion sequences of structural variant calls☆29Updated 3 years ago
- GFA insert into GenomicSQLite☆48Updated 3 years ago
- ☆15Updated 4 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆33Updated last year
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆13Updated last year
- Differential k-mer analysis☆33Updated 9 months ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆31Updated 3 weeks ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 3 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 4 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆23Updated 4 months ago
- ☆13Updated 2 months ago
- Filter of Pairwise Alignement☆44Updated 2 years ago
- Statistics and analysis for variation graphs☆31Updated 3 weeks ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆51Updated 2 years ago
- ☆32Updated last year
- VNTR annotation using motif selection☆29Updated 3 weeks ago
- Identification of segmental duplications in the genome☆26Updated 2 years ago
- Scaffolding with Ultralong Reads☆14Updated 3 years ago
- Programs implementing the trio-binning genome assembly method☆19Updated 11 months ago
- Code to create a PRG from a Multiple Sequence Alignment file☆22Updated 7 months ago
- convert PAF format to CHAIN format☆26Updated 6 months ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- Paired REad TEXTure Mapper. Converts SAM formatted read pairs into genome contact maps.☆20Updated 2 years ago
- Correcting errors in noisy long reads using variation graphs☆51Updated last year
- linearize and simplify variation graphs using blocked partial order alignment☆56Updated 3 weeks ago
- Indel-aware consensus from aligned BAMs☆20Updated last year