ekg / edyeetLinks
base-accurate DNA sequence alignments using edlib and mashmap2
☆33Updated 4 years ago
Alternatives and similar repositories for edyeet
Users that are interested in edyeet are comparing it to the libraries listed below
Sorting:
- ☆28Updated last month
- recompute GFA link overlaps☆25Updated 2 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆42Updated last year
- ☆15Updated 4 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated last week
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated last year
- GFA insert into GenomicSQLite☆49Updated 3 years ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 4 years ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆38Updated 7 months ago
- URMAP ultra-fast read mapper☆38Updated 4 years ago
- ☆32Updated 2 years ago
- Scaffolding with Ultralong Reads☆15Updated 4 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated last month
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆28Updated 8 months ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- ☆21Updated 5 years ago
- Differential k-mer analysis☆36Updated last year
- Convert HAL to VG☆22Updated 9 months ago
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- extract MSAs from genome variation graphs☆33Updated 4 years ago
- genotyping by Mapping-free ALternate-allele detection of known VAriants☆10Updated 2 years ago
- Programs implementing the trio-binning genome assembly method☆19Updated last year
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆54Updated 3 years ago
- General purpose utility related to GAF files☆28Updated last week
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 5 months ago