theaidenlab / AGWG-mergeView external linksLinks
☆15Aug 6, 2018Updated 7 years ago
Alternatives and similar repositories for AGWG-merge
Users that are interested in AGWG-merge are comparing it to the libraries listed below
Sorting:
- Simple tools for working with Hi-C data☆18Dec 19, 2018Updated 7 years ago
- ☆13Nov 15, 2017Updated 8 years ago
- A tool for recovering synteny blocks from multiple alignment☆32Oct 18, 2021Updated 4 years ago
- ☆13Jan 20, 2026Updated 3 weeks ago
- Genome Annotation Pipeline☆43Aug 20, 2024Updated last year
- Add multiple thread function for genome comparison☆16Sep 29, 2021Updated 4 years ago
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Feb 28, 2017Updated 8 years ago
- parallelLastz: Running Lastz in parallel☆17Sep 13, 2024Updated last year
- ☆78Dec 4, 2019Updated 6 years ago
- Scripts to reproduce TrioBinning manuscript☆17Mar 31, 2020Updated 5 years ago
- Tools for working with agp files☆19Jun 26, 2025Updated 7 months ago
- ☆33Aug 18, 2024Updated last year
- A nextflow pipeline for polishing CLR assemblies☆18Feb 3, 2023Updated 3 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆31Jan 3, 2022Updated 4 years ago
- Dot: An interactive dot plot viewer for comparative genomics☆35May 4, 2023Updated 2 years ago
- A tool for discovering transposable elements and describing patterns of genome evolution☆31Apr 23, 2023Updated 2 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Mar 3, 2025Updated 11 months ago
- Annotate Olfactory receptor CDS from genome☆10Apr 29, 2023Updated 2 years ago
- A module for improving the insertion sequences of structural variant calls☆33Jul 14, 2021Updated 4 years ago
- 3D de novo assembly (3D DNA) pipeline☆222Nov 29, 2023Updated 2 years ago
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18Jan 11, 2021Updated 5 years ago
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Apr 25, 2025Updated 9 months ago
- Bioinformatics scripts produced over the course of my work. Now maintained on GitLab.☆69Sep 7, 2019Updated 6 years ago
- ☆16Jan 14, 2026Updated last month
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆37Feb 15, 2025Updated last year
- Bioinformatics / Explore oligonucleotide composition similarity between assembly contigs or scaffolds to detect contaminant DNA.☆12Feb 27, 2019Updated 6 years ago
- Scaffolding with assembly likelihood optimization☆21Dec 14, 2020Updated 5 years ago
- Code and files used in teaching and training courses.☆31Nov 25, 2016Updated 9 years ago
- This toolkit deals with GEnomic sequence and genome structure ANnotation files between inbreeding lines and species.☆45Mar 2, 2023Updated 2 years ago
- A Hi-C scaffolding method☆22Dec 22, 2021Updated 4 years ago
- Evaluate variant calls and its combination with k-mer multiplicity☆67Dec 2, 2022Updated 3 years ago
- Novo&Stitch is a genome assembly reconciliation tool based on optical map.☆10Oct 21, 2019Updated 6 years ago
- The complete sequence of a Chinese individual☆11Oct 8, 2024Updated last year
- Code for TAD_SV project☆11Mar 16, 2022Updated 3 years ago
- A pipeline for scaffolding a genome assembly using Hi-C☆13Nov 24, 2022Updated 3 years ago
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated last year
- Pipelines to run STRUCTURE using multiple front-ends (CLUMPAK+StrAuto, Structure_threader)☆11Oct 5, 2020Updated 5 years ago
- Same species annotation lift over pipeline.☆97Jul 21, 2023Updated 2 years ago
- Large genome reassembly based on Hi-C data, continuation of GRAAL☆43Mar 20, 2024Updated last year