☆15Aug 6, 2018Updated 7 years ago
Alternatives and similar repositories for AGWG-merge
Users that are interested in AGWG-merge are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Simple tools for working with Hi-C data☆20Dec 19, 2018Updated 7 years ago
- ☆13Nov 15, 2017Updated 8 years ago
- A tool for recovering synteny blocks from multiple alignment☆33Oct 18, 2021Updated 4 years ago
- ☆13Jan 20, 2026Updated 6 months ago
- parallelLastz: Running Lastz in parallel☆18Sep 13, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Tools for working with agp files☆19Jun 26, 2025Updated last year
- Scripts to reproduce TrioBinning manuscript☆17Mar 31, 2020Updated 6 years ago
- ☆78Dec 4, 2019Updated 6 years ago
- Code for TAD_SV project☆11Mar 16, 2022Updated 4 years ago
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Feb 28, 2017Updated 9 years ago
- Annotate Olfactory receptor CDS from genome☆11Apr 29, 2023Updated 3 years ago
- Add multiple thread function for genome comparison☆17Sep 29, 2021Updated 4 years ago
- Genome Annotation Pipeline☆45Aug 20, 2024Updated last year
- Reduction of Althaps and Duplicate Contigs for Improved Downstream Analysis☆21Jun 28, 2026Updated 3 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆34Jan 3, 2022Updated 4 years ago
- 3D de novo assembly (3D DNA) pipeline☆228Nov 29, 2023Updated 2 years ago
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Apr 25, 2025Updated last year
- Scaffolding with assembly likelihood optimization☆21Dec 14, 2020Updated 5 years ago
- MP-EST estimates species trees from a set of gene trees by maximizing a pseudo-likelihood function☆13Oct 31, 2025Updated 8 months ago
- A nextflow pipeline for polishing CLR assemblies☆18Feb 3, 2023Updated 3 years ago
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆42Feb 15, 2025Updated last year
- ☆36Aug 18, 2024Updated last year
- A tool for discovering transposable elements and describing patterns of genome evolution☆32Apr 23, 2023Updated 3 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Repository for the 2017 Genome Biology publication, "The interplay of demography and selection during maize domestication and expansion"☆17Nov 24, 2020Updated 5 years ago
- Main scripts and commands used to analyze goat population genetic and domestication☆19Mar 25, 2019Updated 7 years ago
- Pipelines to run STRUCTURE using multiple front-ends (CLUMPAK+StrAuto, Structure_threader)☆13Oct 5, 2020Updated 5 years ago
- Reference-agnostic Representation and Visualization of Pan-genomes☆18Sep 16, 2021Updated 4 years ago
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18May 30, 2026Updated last month
- Haplotype-aware genome assembly toolkit☆30Jan 8, 2020Updated 6 years ago
- A module for improving the insertion sequences of structural variant calls☆33Jul 14, 2021Updated 5 years ago
- long-read depth breaking☆12Apr 19, 2018Updated 8 years ago
- Dot: An interactive dot plot viewer for comparative genomics☆37Jun 22, 2026Updated 3 weeks ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆25Feb 24, 2026Updated 4 months ago
- ☆36Dec 6, 2017Updated 8 years ago
- Bioinformatics scripts produced over the course of my work. Now maintained on GitLab.☆73Sep 7, 2019Updated 6 years ago
- Evaluate variant calls and its combination with k-mer multiplicity☆69Dec 2, 2022Updated 3 years ago
- ☆12Jul 19, 2019Updated 7 years ago
- A Hi-C scaffolding method☆22Dec 22, 2021Updated 4 years ago
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated 2 years ago