Compute N50/NG50 and auN/auNG
☆33Oct 7, 2023Updated 2 years ago
Alternatives and similar repositories for calN50
Users that are interested in calN50 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆48Feb 23, 2021Updated 5 years ago
- Identification of segmental duplications in the genome☆28Mar 1, 2022Updated 4 years ago
- Simple tools for working with Hi-C data☆18Dec 19, 2018Updated 7 years ago
- haplotypic duplication identification tool☆280Oct 30, 2025Updated 5 months ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆108Jan 17, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆19Mar 26, 2023Updated 3 years ago
- Yet another k-mer analyzer☆166Dec 30, 2025Updated 3 months ago
- A program for assessing the T2T genome continuity☆94Feb 28, 2026Updated last month
- OpenGL Powered Pretext Contact Map Viewer☆59Mar 30, 2026Updated 2 weeks ago
- Align proteins to genomes with splicing and frameshift☆398Jan 5, 2026Updated 3 months ago
- 🚝RAILS and 👞🔨Cobbler: Assembly Improvement by Long Sequence Scaffolding/Gap-filling☆27Apr 1, 2026Updated last week
- Visualisation and prioritisation of genomic variants from human exome sequencing projects☆13Apr 23, 2019Updated 6 years ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆189May 17, 2024Updated last year
- Find, circularise and annotate mitogenome from PacBio assemblies☆194May 11, 2025Updated 11 months ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A gap-closing software tool that uses long reads to enhance genome assembly.☆233Sep 6, 2024Updated last year
- Paired REad TEXTure Mapper. Converts SAM formatted read pairs into genome contact maps.☆26Mar 27, 2026Updated 2 weeks ago
- Detect and phase minor SNVs from long-read sequencing data☆14Dec 28, 2021Updated 4 years ago
- A fast tool for hybrid genome assembly of long and short reads☆78Apr 22, 2020Updated 5 years ago
- ☆29Oct 14, 2025Updated 6 months ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆108Jun 6, 2021Updated 4 years ago
- VGP repository for the genome assembly working group☆193Mar 31, 2026Updated 2 weeks ago
- k-mer based assembly evaluation☆341Jun 28, 2024Updated last year
- Constructing a pangenome gene graph☆206Aug 11, 2025Updated 8 months ago
- Deploy open-source AI quickly and easily - Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Gene model transfer from closely related reference genomes using cDNA alignments☆10Aug 27, 2020Updated 5 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆239Dec 29, 2023Updated 2 years ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Apr 8, 2021Updated 5 years ago
- Creates an N-chart for comparing assembly lengths, including script for counting assembly lengths from a fasta file☆13Feb 2, 2017Updated 9 years ago
- Evaluate variant calls and its combination with k-mer multiplicity☆68Dec 2, 2022Updated 3 years ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆36Oct 27, 2025Updated 5 months ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69May 22, 2021Updated 4 years ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆209Nov 18, 2022Updated 3 years ago
- CHM13 human reference genome issue tracking☆20Jan 18, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- This is a method to find telomeres and centromeres in plants.☆43Jun 17, 2023Updated 2 years ago
- ChIP-seq pipeline tool for quality check, normalization, statistical analysis, and visualization of multiple ChIP-seq samples.☆24Mar 16, 2026Updated 3 weeks ago
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated 11 months ago
- software tools for haplotype assembly from sequence data☆229Feb 9, 2025Updated last year
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Feb 17, 2022Updated 4 years ago
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Feb 6, 2022Updated 4 years ago
- Fast alignment and preprocessing of chromatin profiles☆217Mar 20, 2026Updated 3 weeks ago