nlapalu / SDDetector
Segmental duplication detection tool
☆13Updated 2 years ago
Alternatives and similar repositories for SDDetector:
Users that are interested in SDDetector are comparing it to the libraries listed below
- A comparative genome scaffolding tool☆17Updated 6 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 6 years ago
- profile the repeat landscape in a genome☆15Updated 10 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 4 years ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆12Updated 6 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆19Updated 6 months ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated 10 months ago
- Scripts to do haplotype analysis on pan genomes.☆21Updated 4 years ago
- Genome alignment and synteny plots☆28Updated last year
- Genome assembly soft-masking using Red (REpeat Detector)☆16Updated 6 years ago
- Visualising discordant reads☆15Updated 9 years ago
- A Hi-C scaffolding method☆22Updated 3 years ago
- De-novo Assembly Structural Variant Caller☆13Updated 8 years ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Updated last year
- The MafFilter genome alignment processor☆17Updated 5 months ago
- Better Alignments with Translated HMMER☆17Updated this week
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Updated 8 years ago
- ☆15Updated 3 weeks ago
- Identification of segmental duplications in the genome☆26Updated 3 years ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 8 months ago
- Genome Assembly 102☆14Updated last month
- Very simple and configurable all-in-one dotplot program☆12Updated last year
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆25Updated 2 weeks ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 3 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆26Updated 5 months ago
- A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, a…☆15Updated last year
- Tandem Repeats Finder: a program to analyze DNA sequences☆14Updated 2 years ago
- ☆22Updated 6 months ago