browning-lab / hap-ibd
The hap-ibd program detects identity-by-descent segments in phased genotype data.
☆47Updated 9 months ago
Alternatives and similar repositories for hap-ibd:
Users that are interested in hap-ibd are comparing it to the libraries listed below
- Pinpoints the mutation favored by selection☆33Updated 3 years ago
- QUILT: Low coverage whole genome sequence imputation with large reference panels☆57Updated 4 months ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆26Updated 6 years ago
- Algorithm to detect germline and de novo transposon insertions☆27Updated 11 months ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆40Updated 5 months ago
- Converts a VCF file to a FASTA alignment provided a reference genome and a GFF file☆49Updated 5 months ago
- PacBio BAM toolkit☆41Updated last month
- Evaluation of phasing performance☆22Updated 7 years ago
- STITCH - Sequencing To Imputation Through Constructing Haplotypes☆79Updated last month
- R-package: Calculation of haplotype blocks and libraries☆30Updated last month
- Wally: Visualization of aligned sequencing reads and contigs☆113Updated 3 months ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 2 months ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- A pipeline that accepts a VCF file to run through Admixture☆59Updated 2 months ago
- Simple pileup-based variant caller☆87Updated last month
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆38Updated last year
- ENCODE long read RNA-seq pipeline☆45Updated 2 years ago
- Structural variant merging tool☆49Updated 7 months ago
- Tools for the analysis of structural variation in genomes☆78Updated last year
- Same species annotation lift over pipeline.☆96Updated last year
- BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions☆35Updated this week
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆47Updated 4 years ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆71Updated 3 years ago
- Pipelines and tools for the processing of ancient and modern HTS data.☆47Updated last week
- A Nextflow workflow to generate lift over files for any pair of genomes☆64Updated last month
- A set of workflows written in Nextflow for Genome Annotation.☆45Updated 8 months ago
- Error correction of ONT transcript reads☆58Updated last year
- Application of pan-genome for population☆103Updated 5 months ago
- ☆19Updated 10 months ago