browning-lab / hap-ibdLinks
The hap-ibd program detects identity-by-descent segments in phased genotype data.
☆48Updated last year
Alternatives and similar repositories for hap-ibd
Users that are interested in hap-ibd are comparing it to the libraries listed below
Sorting:
- Pinpoints the mutation favored by selection☆34Updated 3 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- A pipeline that accepts a VCF file to run through Admixture☆62Updated 9 months ago
- ☆25Updated last year
- ☆64Updated 2 years ago
- Structural variant caller☆55Updated 3 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 9 months ago
- Estimate recombination rates from population genetic data☆68Updated 5 years ago
- QUILT: Low coverage whole genome sequence imputation with large reference panels☆64Updated last week
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆43Updated 11 months ago
- Genealogical Estimation of Variant Age (GEVA)☆31Updated 4 years ago
- Here we present a method to plot the outputs of RFMIX version 2☆27Updated last year
- Variant annotation and merging pipeline☆39Updated 2 months ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆74Updated 4 years ago
- ARG-based inference of selection using deep learning☆18Updated 2 years ago
- Tools for the analysis of structural variation in genomes☆81Updated last year
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- BamDeal: a comprehensive toolkit for bam manipulation☆54Updated 2 years ago
- Transposable element polymorphism identification☆34Updated 5 years ago
- ☆81Updated 7 months ago
- Algorithm to detect germline and de novo transposon insertions☆30Updated last month
- Tutorial on using popular tools for learning about population history☆51Updated 7 years ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆51Updated 4 years ago
- R-package: Calculation of haplotype blocks and libraries☆33Updated 2 months ago
- A (very) simple script to QC Hi-C data.☆26Updated 9 months ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆27Updated 7 years ago
- BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions☆38Updated 6 months ago
- Simple pileup-based variant caller☆92Updated 5 months ago
- Converts a VCF file to a FASTA alignment provided a reference genome and a GFF file☆52Updated 2 months ago