☆10Jan 18, 2023Updated 3 years ago
Alternatives and similar repositories for minimiro
Users that are interested in minimiro are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Identification of segmental duplications in the genome☆28Mar 1, 2022Updated 4 years ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 4 months ago
- PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium☆12Apr 5, 2025Updated 11 months ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 7 months ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Scaffolding with Ultralong Reads☆15Nov 11, 2020Updated 5 years ago
- De Bruijn graph construction for large k.☆17Aug 31, 2021Updated 4 years ago
- Rust package for constructing and analyzing phylogenies. (unpolished & unmaintained)☆15May 1, 2025Updated 10 months ago
- This is a series of scripts on the rapid construction of target interval consensus sequences from bam files and the rapid construction of…☆17Jan 12, 2024Updated 2 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆21Aug 2, 2022Updated 3 years ago
- pangenome analyses for complete genomes of great apes (and gibbon)☆20Oct 12, 2024Updated last year
- Segmental Duplication Assembler (SDA).☆44May 7, 2023Updated 2 years ago
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated last year
- ☆10Jun 13, 2020Updated 5 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Aug 1, 2024Updated last year
- lace up GFA files using panSN path name sub-ranges to coordinate the lacing☆14Jul 30, 2025Updated 7 months ago
- COsine SImilarity-based Genotyper using pangenomes☆31Feb 13, 2026Updated last month
- Gene copy number prediction from k-mer frequencies☆15Jul 29, 2024Updated last year
- Scripts to reproduce TrioBinning manuscript☆17Mar 31, 2020Updated 5 years ago
- kProcessor: kmers processing framework.☆10Oct 1, 2023Updated 2 years ago
- Simple pipeline to go from an alignment to a neutral model, using the PHAST toolkit☆11Jan 17, 2020Updated 6 years ago
- Rust implementation of VG handle graph☆19Dec 18, 2023Updated 2 years ago
- ☆31Feb 14, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆36May 14, 2025Updated 10 months ago
- gia: Genomic Interval Arithmetic☆66Aug 21, 2024Updated last year
- Unzip assembly graphs with Hi-C data and/or long reads.☆27Sep 20, 2024Updated last year
- Everything but the kitchen sink☆13Feb 6, 2025Updated last year
- ☆151Nov 5, 2025Updated 4 months ago
- ☆10Mar 4, 2025Updated last year
- ☆16Mar 17, 2023Updated 3 years ago
- Tools and Utilities for msmc and msmc2☆50Jan 23, 2026Updated 2 months ago
- Tools for identifying introgressed archaic sequence.☆12Jun 20, 2017Updated 8 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Portable solution to generate genome alignment chains using lastz☆61Dec 20, 2025Updated 3 months ago
- Tools for F1 hybrid PSMC (hPSMC) divergence time inference from whole genomes☆14May 29, 2024Updated last year
- ☆32Jan 3, 2025Updated last year
- implicit pangenome graph☆98Updated this week
- R Package for phasing of single cell Strand-seq data☆10Jan 14, 2025Updated last year
- Efficient low-divergence mapping of long reads in minimizer space☆69Oct 7, 2023Updated 2 years ago
- Experimental String Graph construction and processing☆26Aug 14, 2023Updated 2 years ago