☆10Jan 18, 2023Updated 3 years ago
Alternatives and similar repositories for minimiro
Users that are interested in minimiro are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Identification of segmental duplications in the genome☆29Mar 1, 2022Updated 4 years ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 11 months ago
- PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium☆14Apr 5, 2025Updated last year
- Pipelines for using T2T genome as a reference☆15Dec 11, 2024Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated last year
- Scaffolding with Ultralong Reads☆15Nov 11, 2020Updated 5 years ago
- De Bruijn graph construction for large k.☆17Aug 31, 2021Updated 5 years ago
- Rust package for constructing and analyzing phylogenies. (unpolished & unmaintained)☆15May 1, 2025Updated last year
- This is a series of scripts on the rapid construction of target interval consensus sequences from bam files and the rapid construction of…☆17Jan 12, 2024Updated 2 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆24Aug 2, 2022Updated 4 years ago
- pangenome analyses for complete genomes of great apes (and gibbon)☆21Oct 12, 2024Updated 2 years ago
- Segmental Duplication Assembler (SDA).☆44May 7, 2023Updated 3 years ago
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆10Jun 13, 2020Updated 6 years ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆23Aug 1, 2024Updated 2 years ago
- lace up GFA files using panSN path name sub-ranges to coordinate the lacing☆14Jul 30, 2025Updated last year
- ☆11Mar 4, 2025Updated last year
- Scripts to reproduce TrioBinning manuscript☆18Mar 31, 2020Updated 6 years ago
- Simple pipeline to go from an alignment to a neutral model, using the PHAST toolkit☆11Jan 17, 2020Updated 6 years ago
- Rust implementation of VG handle graph☆19Dec 18, 2023Updated 2 years ago
- ☆32Jun 18, 2026Updated 3 months ago
- gia: Genomic Interval Arithmetic☆69Aug 21, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Unzip assembly graphs with Hi-C data and/or long reads.☆29May 7, 2026Updated 5 months ago
- Everything but the kitchen sink☆13Feb 6, 2025Updated last year
- Portable solution to generate genome alignment chains using lastz☆73Sep 4, 2026Updated last month
- ☆17Mar 17, 2023Updated 3 years ago
- Tools and Utilities for msmc and msmc2☆51Jan 23, 2026Updated 8 months ago
- Centromere mapping and annotation pipeline☆28Jun 26, 2026Updated 3 months ago
- Tools for identifying introgressed archaic sequence.☆12Jun 20, 2017Updated 9 years ago
- R Package for phasing of single cell Strand-seq data☆11Jan 14, 2025Updated last year
- ☆37Aug 3, 2026Updated 2 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Tools for F1 hybrid PSMC (hPSMC) divergence time inference from whole genomes☆15May 29, 2024Updated 2 years ago
- Efficient low-divergence mapping of long reads in minimizer space☆70Oct 7, 2023Updated 3 years ago
- Experimental String Graph construction and processing☆25Aug 14, 2023Updated 3 years ago
- Interactive eQTL visualizations☆14Dec 12, 2022Updated 3 years ago
- A k-mer frequency statistics software☆15Nov 19, 2021Updated 4 years ago
- Code repository for the T2T-Y paper☆25Jul 11, 2023Updated 3 years ago
- A tool for estimating time-dependent migration rates based on cross-/within-population coalescent rates from MSMC☆16Apr 6, 2025Updated last year