mrvollger / SDA
Segmental Duplication Assembler (SDA).
☆44Updated last year
Related projects ⓘ
Alternatives and complementary repositories for SDA
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆45Updated 3 years ago
- calling SVs from Blasr contig level alignments☆53Updated 6 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆35Updated last week
- Compute N50/NG50 and auN/auNG☆31Updated last year
- An easy way to run BioNano genomic analysis☆27Updated 3 years ago
- TGS scaffolding☆45Updated 3 years ago
- ☆31Updated 4 years ago
- ☆30Updated 2 weeks ago
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Updated 2 years ago
- ☆77Updated 4 years ago
- assembly evaluation tool☆34Updated 2 years ago
- Structural variant caller☆54Updated 2 years ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆43Updated 9 months ago
- MarginPolish: Graph based assembly polishing☆45Updated 3 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆33Updated 2 years ago
- Python wrappers for programs that search for transposable elements☆19Updated 8 years ago
- Variant annotation and merging pipeline☆29Updated 3 weeks ago
- SV genotyping with long reads☆40Updated last year
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- Tool for globally phasing diploid assembly graphs with orthogonal data☆38Updated 3 months ago
- ☆41Updated 6 months ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆64Updated last month
- Custom tools to 'facilitate' BioNano Genomics data analysis☆33Updated 6 years ago
- ☆79Updated 6 months ago
- Improved Phased Assembler☆28Updated 2 years ago
- finshingTool☆54Updated 7 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆56Updated last year
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆59Updated 3 years ago