Scripts to download genomes from the NCBI FTP servers
☆1,077Apr 7, 2026Updated last month
Alternatives and similar repositories for ncbi-genome-download
Users that are interested in ncbi-genome-download are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Download files from NCBI Entrez by accession☆134Sep 3, 2024Updated last year
- Fast Whole-Genome Similarity (ANI) Estimation☆461Dec 16, 2025Updated 5 months ago
- hybrid assembly pipeline for bacterial genomes☆642Jul 25, 2024Updated last year
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆643May 15, 2026Updated 2 weeks ago
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆599May 20, 2026Updated last week
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Mass screening of contigs for antimicrobial and virulence genes☆495Apr 3, 2026Updated last month
- A flexible pipeline for complete analysis of bacterial genomes☆513May 21, 2026Updated last week
- Rapid comparison and dereplication of genomes☆344Nov 10, 2025Updated 6 months ago
- A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV☆471Updated this week
- Rapid prokaryotic genome annotation☆982Jan 6, 2026Updated 4 months ago
- An updated pipeline for pangenome investigation☆361Updated this week
- Rapid haploid variant calling and core genome alignment☆585Dec 12, 2025Updated 5 months ago
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆471Jul 28, 2023Updated 2 years ago
- Gene cluster comparison figure generator☆640Dec 22, 2025Updated 5 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Quickly search, compare, and analyze genomic and metagenomic data sets.☆544May 26, 2026Updated last week
- A tool for generating consensus long-read assemblies for bacterial genomes☆344Sep 11, 2025Updated 8 months ago
- Application and Python module for average nucleotide identity analyses of microbes.☆217Jul 1, 2025Updated 11 months ago
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆261Dec 13, 2025Updated 5 months ago
- Fast genome-wide functional annotation through orthology assignment☆737May 22, 2026Updated last week
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,366Apr 24, 2026Updated last month
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆409Mar 2, 2026Updated 2 months ago
- A cross-platform and ultrafast toolkit for FASTA/Q file manipulation☆1,564May 22, 2026Updated last week
- Pan-genome wide association studies☆218May 29, 2024Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆419May 20, 2026Updated last week
- Rapid large-scale prokaryote pan genome analysis☆379Nov 3, 2025Updated 6 months ago
- Read alignment statistics for metagenomics☆398Apr 8, 2026Updated last month
- Accelerated BLAST compatible local sequence aligner.☆1,296May 25, 2026Updated last week
- ATLAS - Three commands to start analyzing your metagenome data☆405Nov 28, 2025Updated 6 months ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆334May 20, 2026Updated last week
- A user-friendly workflow for phylogenomics☆228May 12, 2026Updated 3 weeks ago
- CAMISIM: Simulating metagenomes and microbial communities☆225Updated this week
- An analysis and visualization platform for 'omics data☆522Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and p…☆368May 22, 2026Updated last week
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆374Aug 1, 2025Updated 10 months ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆266Mar 20, 2025Updated last year
- Variational autoencoder for metagenomic binning☆327Apr 27, 2026Updated last month
- Create a tree using Mash distances☆188Oct 24, 2023Updated 2 years ago
- Fast genome and metagenome distance estimation using MinHash☆443Sep 19, 2025Updated 8 months ago
- Bioinformatics program inStrain☆187Mar 12, 2026Updated 2 months ago