kblin / ncbi-genome-download
Scripts to download genomes from the NCBI FTP servers
☆971Updated 5 months ago
Alternatives and similar repositories for ncbi-genome-download:
Users that are interested in ncbi-genome-download are comparing it to the libraries listed below
- Phylogenetic orthology inference for comparative genomics☆734Updated 2 months ago
- Fast genome-wide functional annotation through orthology assignment☆585Updated 8 months ago
- Bioinformatics code libraries and scripts☆507Updated 2 months ago
- De novo assembler for single molecule sequencing reads using repeat graphs☆802Updated 4 months ago
- Rapid prokaryotic genome annotation☆858Updated 9 months ago
- Python library to facilitate genome assembly, annotation, and comparative genomics☆787Updated last week
- SPAdes Genome Assembler☆776Updated this week
- Toolkit for processing sequences in FASTA/Q formats☆1,414Updated 5 months ago
- The second version of the Kraken taxonomic sequence classification system☆746Updated this week
- python module to plot beautiful and highly customizable genome browser tracks☆785Updated 6 months ago
- A list of interesting genome browser and genome visualization programs☆894Updated this week
- Gene cluster comparison figure generator☆550Updated last month
- A quality control analysis tool for high throughput sequencing data☆469Updated last year
- hybrid assembly pipeline for bacterial genomes☆577Updated 5 months ago
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,253Updated this week
- Automatically exported from code.google.com/p/cdhit☆653Updated 2 years ago
- Genome assembly evaluation tool☆416Updated 2 months ago
- A complete pipeline for metagenomic analysis☆390Updated last week
- A fast and sensitive gapped read aligner☆688Updated last month
- RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.☆959Updated this week
- Prodigal Gene Prediction Software☆460Updated 11 months ago
- SRA Tools☆1,160Updated this week
- Graph-based alignment (Hierarchical Graph FM index)☆487Updated 2 months ago
- NCBI Prokaryotic Genome Annotation Pipeline☆323Updated this week
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆409Updated last year
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆467Updated last month
- Rapid large-scale prokaryote pan genome analysis☆329Updated 2 years ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆567Updated 3 weeks ago
- Trinity RNA-Seq de novo transcriptome assembly☆844Updated 5 months ago