Scripts to download genomes from the NCBI FTP servers
☆1,087Apr 7, 2026Updated 5 months ago
Alternatives and similar repositories for ncbi-genome-download
Users that are interested in ncbi-genome-download are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Fast Whole-Genome Similarity (ANI) Estimation☆481Sep 14, 2026Updated 2 weeks ago
- Download files from NCBI Entrez by accession☆133Sep 3, 2024Updated 2 years ago
- hybrid assembly pipeline for bacterial genomes☆653Jul 29, 2026Updated 2 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆681Aug 7, 2026Updated last month
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆622Sep 26, 2026Updated last week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A flexible pipeline for complete analysis of bacterial genomes☆521Aug 5, 2026Updated last month
- Mass screening of contigs for antimicrobial and virulence genes☆514Jul 17, 2026Updated 2 months ago
- Rapid comparison and dereplication of genomes☆358Sep 4, 2026Updated 3 weeks ago
- Rapid prokaryotic genome annotation☆995Jan 6, 2026Updated 8 months ago
- A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV☆481Jul 15, 2026Updated 2 months ago
- Rapid haploid variant calling and core genome alignment☆594Dec 12, 2025Updated 9 months ago
- An updated pipeline for pangenome investigation☆375Jul 2, 2026Updated 3 months ago
- Gene cluster comparison figure generator☆654Updated this week
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆478Sep 20, 2026Updated last week
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- A tool for generating consensus long-read assemblies for bacterial genomes☆349Jul 24, 2026Updated 2 months ago
- Quickly search, compare, and analyze genomic and metagenomic data sets.☆556Updated this week
- Application and Python module for average nucleotide identity analyses of microbes.☆218Jul 1, 2025Updated last year
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,434Updated this week
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆268Jun 11, 2026Updated 3 months ago
- Fast genome-wide functional annotation through orthology assignment☆787Aug 13, 2026Updated last month
- A cross-platform and ultrafast toolkit for FASTA/Q file manipulation☆1,595Sep 24, 2026Updated last week
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆342Sep 23, 2026Updated last week
- Pan-genome wide association studies☆226May 29, 2024Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆410Mar 2, 2026Updated 7 months ago
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆434Updated this week
- Rapid large-scale prokaryote pan genome analysis☆380Nov 3, 2025Updated 11 months ago
- Read alignment statistics for metagenomics☆407Sep 23, 2026Updated last week
- Accelerated BLAST compatible local sequence aligner.☆1,325Updated this week
- ATLAS - Three commands to start analyzing your metagenome data☆405May 28, 2026Updated 4 months ago
- A user-friendly workflow for phylogenomics☆234Updated this week
- An analysis and visualization platform for 'omics data☆535Updated this week
- AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and p…☆389Aug 31, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- NCBI Prokaryotic Genome Annotation Pipeline☆389Aug 19, 2026Updated last month
- CAMISIM: Simulating metagenomes and microbial communities☆233Jul 16, 2026Updated 2 months ago
- Variational autoencoder for metagenomic binning☆332Apr 27, 2026Updated 5 months ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆383Aug 1, 2025Updated last year
- Assessing the quality of metagenome-derived genome bins using machine learning☆280Mar 20, 2025Updated last year
- Create a tree using Mash distances☆191Oct 24, 2023Updated 2 years ago
- Bioinformatics program inStrain☆192Updated this week