Classifier for metagenomic sequences
β278Apr 15, 2026Updated 4 months ago
Alternatives and similar repositories for centrifuge
Users that are interested in centrifuge are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- π Interactive analysis of metagenomics dataβ455Sep 17, 2025Updated 10 months ago
- The second version of the Kraken taxonomic sequence classification systemβ931Updated this week
- π KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific resultsβ252Jan 18, 2024Updated 2 years ago
- DAS Toolβ177May 2, 2024Updated 2 years ago
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.β617May 20, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer β’ AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomesβ411Mar 2, 2026Updated 5 months ago
- Kraken taxonomic sequence classification systemβ227Sep 27, 2021Updated 4 years ago
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species iβ¦β358Mar 16, 2026Updated 4 months ago
- Fast genome and metagenome distance estimation using MinHashβ451Sep 19, 2025Updated 10 months ago
- Ultra-fast and memory-efficient (meta-)genome assemblerβ720Oct 28, 2025Updated 9 months ago
- Fast taxonomic classification of metagenomic sequencing reads using a protein reference databaseβ306Jun 9, 2026Updated 2 months ago
- Recentrifuge: robust comparative analysis and contamination removal for metagenomicsβ104Aug 2, 2026Updated last week
- Classifier for metagenomic sequencesβ30Nov 12, 2018Updated 7 years ago
- Mummer alignment toolβ571Feb 4, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways β’ AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output filesβ382Aug 1, 2025Updated last year
- hybrid assembly pipeline for bacterial genomesβ650Jul 29, 2026Updated 2 weeks ago
- quality filtering tool for long readsβ412Sep 17, 2025Updated 10 months ago
- adapter trimmer for Oxford Nanopore readsβ386May 8, 2024Updated 2 years ago
- De novo assembler for single molecule sequencing reads using repeat graphsβ948Apr 3, 2026Updated 4 months ago
- k-SLAM ultra fast alignment and taxonomic classification of metagenomic datasetsβ23Nov 18, 2018Updated 7 years ago
- Rapid prokaryotic genome annotationβ992Jan 6, 2026Updated 7 months ago
- A robust, extensible metagenomics pipelineβ177Updated this week
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/grβ¦β301May 9, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer β’ AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Prodigal Gene Prediction Softwareβ551Jan 23, 2024Updated 2 years ago
- Ultrafast de novo assembly for long noisy reads (though having no consensus step)β356Jul 19, 2025Updated last year
- A complete pipeline for metagenomic analysisβ451Updated this week
- Calculates the lowest common ancestors of each query sequence in a Blast resultβ32Oct 25, 2017Updated 8 years ago
- De novo Extraction of Strains from MetAgeNomesβ72Jun 17, 2020Updated 6 years ago
- Antimicrobial Resistance Identification By Assemblyβ186Oct 12, 2023Updated 2 years ago
- Variational autoencoder for metagenomic binningβ331Apr 27, 2026Updated 3 months ago
- Read alignment statistics for metagenomicsβ405Jul 10, 2026Updated last month
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.β228May 9, 2026Updated 3 months ago
- GPUs on demand by Runpod - Special Offer Available β’ AdRun AI, ML, and HPC workloads on powerful cloud GPUsβwithout limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- memory efficient, fast & precise taxnomomic classification system for metagenomic read mappingβ65Jan 22, 2026Updated 6 months ago
- Assessing the quality of metagenome-derived genome bins using machine learningβ275Mar 20, 2025Updated last year
- A tool to circularize genome assembliesβ257Apr 6, 2024Updated 2 years ago
- ONT assembly and Illumina polishing pipelineβ87Dec 8, 2020Updated 5 years ago
- β85Sep 13, 2023Updated 2 years ago
- Accelerated BLAST compatible local sequence aligner.β1,313Aug 4, 2026Updated last week
- Rapid haploid variant calling and core genome alignmentβ594Dec 12, 2025Updated 8 months ago