DaehwanKimLab / centrifugeLinks
Classifier for metagenomic sequences
☆266Updated 3 months ago
Alternatives and similar repositories for centrifuge
Users that are interested in centrifuge are comparing it to the libraries listed below
Sorting:
- A tool for generating consensus long-read assemblies for bacterial genomes☆333Updated 3 weeks ago
- quality filtering tool for long reads☆366Updated 3 weeks ago
- A tool to circularize genome assemblies☆247Updated last year
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆241Updated 4 years ago
- Scan contig files against PubMLST typing schemes☆247Updated 2 years ago
- Pilon is an automated genome assembly improvement and variant detection tool☆369Updated 3 years ago
- Filtering and trimming of long read sequencing data☆209Updated 2 years ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆283Updated 11 months ago
- Bacterial ribosomal RNA predictor☆256Updated 2 years ago
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆237Updated 2 years ago
- Fast taxonomic classification of metagenomic sequencing reads using a protein reference database☆291Updated 5 months ago
- ☆263Updated 3 months ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆351Updated 2 months ago
- NOVOPlasty - The organelle assembler and heteroplasmy caller☆190Updated last year
- Fast genome analysis from unassembled short reads☆297Updated last year
- 🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results☆239Updated last year
- Finds SNP sites from a multi-FASTA alignment file☆266Updated 4 years ago
- Tool to plot synteny and structural rearrangements between genomes☆321Updated 6 months ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆204Updated last year
- An overview of all nanopack tools☆270Updated 2 years ago
- Quality control for MinION sequencing data☆216Updated 2 years ago
- Rapid comparison and dereplication of genomes☆311Updated 3 months ago
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆221Updated this week
- ☆212Updated last week
- Eukaryotic Genome Annotation Pipeline☆363Updated 3 months ago
- An updated pipeline for pangenome investigation☆316Updated 7 months ago
- Pan-genome wide association studies☆204Updated last year
- adapter trimmer for Oxford Nanopore reads☆373Updated last year
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆321Updated 7 months ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆142Updated 2 months ago