Alternatives and similar repositories for vsearch

Users that are interested in vsearch are comparing it to the libraries listed below

• rrwick / Bandage
  a Bioinformatics Application for Navigating De novo Assembly Graphs Easily
  ☆654Updated 2 years ago
• davidemms / OrthoFinder
  Phylogenetic orthology inference for comparative genomics
  ☆813Updated 4 months ago
• rrwick / Unicycler
  hybrid assembly pipeline for bacterial genomes
  ☆625Updated last year
• tseemann / prokka
  Rapid prokaryotic genome annotation
  ☆941Updated last year
• mikolmogorov / Flye
  De novo assembler for single molecule sequencing reads using repeat graphs
  ☆880Updated 6 months ago
• tanghaibao / jcvi
  Python library to facilitate genome assembly, annotation, and comparative genomics
  ☆871Updated last week
• trinityrnaseq / trinityrnaseq
  Trinity RNA-Seq de novo transcriptome assembly
  ☆876Updated 9 months ago
• marbl / canu
  A single molecule sequence assembler for genomes large and small.
  ☆695Updated this week
• marbl / Mash
  Fast genome and metagenome distance estimation using MinHash
  ☆425Updated 2 months ago
• eggnogdb / eggnog-mapper
  Fast genome-wide functional annotation through orthology assignment
  ☆669Updated 5 months ago
• ablab / spades
  SPAdes Genome Assembler
  ☆877Updated last week
• lh3 / seqtk
  Toolkit for processing sequences in FASTA/Q formats
  ☆1,512Updated 5 months ago
• DerrickWood / kraken2
  The second version of the Kraken taxonomic sequence classification system
  ☆846Updated last week
• tseemann / snippy
  Rapid haploid variant calling and core genome alignment
  ☆551Updated last year
• oschwengers / bakta
  Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
  ☆567Updated 3 weeks ago
• freebayes / freebayes
  Bayesian haplotype-based genetic polymorphism discovery and genotyping.
  ☆852Updated 5 months ago
• DaehwanKimLab / hisat2
  Graph-based alignment (Hierarchical Graph FM index)
  ☆519Updated 2 months ago
• qiime2 / qiime2
  Source for the QIIME 2 Framework (Q2F).
  ☆522Updated 2 weeks ago
• wdecoster / NanoPlot
  Plotting scripts for long read sequencing data
  ☆511Updated 2 months ago
• jtamames / SqueezeMeta
  A complete pipeline for metagenomic analysis
  ☆438Updated last week
• gamcil / clinker
  Gene cluster comparison figure generator
  ☆623Updated 11 months ago
• ablab / quast
  Genome assembly evaluation tool
  ☆480Updated last year
• LangilleLab / microbiome_helper
  A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.
  ☆453Updated 10 months ago
• stamatak / standard-RAxML
  ☆346Updated 8 months ago
• tseemann / abricate
  Mass screening of contigs for antimicrobial and virulence genes
  ☆450Updated last year
• bactopia / bactopia
  A flexible pipeline for complete analysis of bacterial genomes
  ☆485Updated last week
• s-andrews / FastQC
  A quality control analysis tool for high throughput sequencing data
  ☆552Updated 2 weeks ago
• bxlab / metaWRAP
  MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis
  ☆448Updated 2 years ago
• hyattpd / Prodigal
  Prodigal Gene Prediction Software
  ☆514Updated last year
• marbl / Krona
  Interactively explore metagenomes and more from a web browser.
  ☆491Updated 3 years ago