Versatile open-source tool for microbiome analysis
☆742Apr 7, 2026Updated last week
Alternatives and similar repositories for vsearch
Users that are interested in vsearch are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A robust and fast clustering method for amplicon-based studies☆146Mar 29, 2026Updated 2 weeks ago
- Accurate sample inference from amplicon data with single nucleotide resolution☆543Feb 13, 2026Updated 2 months ago
- Fast taxonomic classification of metagenomic sequencing reads using a protein reference database☆302Apr 25, 2025Updated 11 months ago
- Accelerated BLAST compatible local sequence aligner.☆1,278Mar 28, 2026Updated 2 weeks ago
- Prodigal Gene Prediction Software☆532Jan 23, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Code, unit tests, and tutorials for running PICRUSt2☆385Nov 27, 2025Updated 4 months ago
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,324Updated this week
- Quickly search, compare, and analyze genomic and metagenomic data sets.☆542Apr 7, 2026Updated last week
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆588Updated this week
- Ultra-fast and memory-efficient (meta-)genome assembler☆705Oct 28, 2025Updated 5 months ago
- Mummer alignment tool☆554Feb 4, 2025Updated last year
- Interactively explore metagenomes and more from a web browser.☆499Dec 22, 2021Updated 4 years ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆406Mar 2, 2026Updated last month
- MMseqs2: ultra fast and sensitive search and clustering suite☆2,023Apr 4, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Fast genome and metagenome distance estimation using MinHash☆438Sep 19, 2025Updated 6 months ago
- Rachis Framework (Formerly Known as QIIME 2 Framework (Q2F))☆527Mar 27, 2026Updated 2 weeks ago
- Rapid prokaryotic genome annotation☆971Jan 6, 2026Updated 3 months ago
- A cross-platform and ultrafast toolkit for FASTA/Q file manipulation☆1,537Mar 31, 2026Updated 2 weeks ago
- Toolkit for processing sequences in FASTA/Q formats☆1,534Jun 1, 2025Updated 10 months ago
- The second version of the Kraken taxonomic sequence classification system☆889Apr 1, 2026Updated last week
- Fast genome-wide functional annotation through orthology assignment☆722Mar 24, 2026Updated 3 weeks ago
- Welcome to the mothur project, initiated by Dr. Patrick Schloss and his software development team in the Department of Microbiology & Imm…☆278Jan 13, 2026Updated 3 months ago
- 🌈 Interactive analysis of metagenomics data☆447Sep 17, 2025Updated 6 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ATLAS - Three commands to start analyzing your metagenome data☆404Nov 28, 2025Updated 4 months ago
- Genome assembly evaluation tool☆508Nov 14, 2024Updated last year
- Fast Whole-Genome Similarity (ANI) Estimation☆454Dec 16, 2025Updated 3 months ago
- Classifier for metagenomic sequences☆272Jun 20, 2025Updated 9 months ago
- A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV☆469Mar 20, 2026Updated 3 weeks ago
- Microbial RNA annotation☆289Updated this week
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆2,154Updated this week
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆341Mar 16, 2026Updated 3 weeks ago
- A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.☆459Feb 13, 2026Updated 2 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- hybrid assembly pipeline for bacterial genomes☆636Jul 25, 2024Updated last year
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆72Dec 21, 2023Updated 2 years ago
- Automatically exported from code.google.com/p/cdhit☆725Oct 11, 2022Updated 3 years ago
- Cutadapt removes adapter sequences from sequencing reads☆575Apr 6, 2026Updated last week
- Read alignment statistics for metagenomics☆396Updated this week
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆467Jul 28, 2023Updated 2 years ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆669Dec 3, 2022Updated 3 years ago