torognes / vsearchLinks
Versatile open-source tool for microbiome analysis
☆706Updated this week
Alternatives and similar repositories for vsearch
Users that are interested in vsearch are comparing it to the libraries listed below
Sorting:
- hybrid assembly pipeline for bacterial genomes☆601Updated 11 months ago
- Rapid prokaryotic genome annotation☆906Updated last year
- Fast genome-wide functional annotation through orthology assignment☆628Updated last week
- The second version of the Kraken taxonomic sequence classification system☆801Updated 2 weeks ago
- Phylogenetic orthology inference for comparative genomics☆778Updated 8 months ago
- Fast genome and metagenome distance estimation using MinHash☆411Updated last year
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆530Updated this week
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆619Updated 2 years ago
- De novo assembler for single molecule sequencing reads using repeat graphs☆846Updated last month
- Gene cluster comparison figure generator☆584Updated 7 months ago
- Mass screening of contigs for antimicrobial and virulence genes☆422Updated last year
- A complete pipeline for metagenomic analysis☆417Updated last week
- Python library to facilitate genome assembly, annotation, and comparative genomics☆830Updated last week
- Rapid haploid variant calling and core genome alignment☆527Updated 11 months ago
- A single molecule sequence assembler for genomes large and small.☆680Updated last month
- Mummer alignment tool☆516Updated 4 months ago
- Trinity RNA-Seq de novo transcriptome assembly☆860Updated 4 months ago
- 🌈 Interactive analysis of metagenomics data☆421Updated 9 months ago
- The next version of bwa-mem☆762Updated 10 months ago
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆349Updated last week
- NCBI Prokaryotic Genome Annotation Pipeline☆339Updated 2 weeks ago
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆426Updated last year
- Graph-based alignment (Hierarchical Graph FM index)☆502Updated 7 months ago
- Rapid large-scale prokaryote pan genome analysis☆351Updated 3 years ago
- Welcome to the mothur project, initiated by Dr. Patrick Schloss and his software development team in the Department of Microbiology & Imm…☆272Updated last month
- Sequence correction provided by ONT Research☆463Updated last month
- Plotting scripts for long read sequencing data☆482Updated last month
- Bayesian haplotype-based genetic polymorphism discovery and genotyping.☆835Updated 3 weeks ago
- A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV☆425Updated last month
- Prodigal Gene Prediction Software☆490Updated last year