Alternatives and similar repositories for vsearch:

Users that are interested in vsearch are comparing it to the libraries listed below

• gamcil / clinker
  Gene cluster comparison figure generator
  ☆555Updated 3 months ago
• tseemann / prokka
  Rapid prokaryotic genome annotation
  ☆877Updated 11 months ago
• eggnogdb / eggnog-mapper
  Fast genome-wide functional annotation through orthology assignment
  ☆596Updated 9 months ago
• rrwick / Unicycler
  hybrid assembly pipeline for bacterial genomes
  ☆584Updated 7 months ago
• mikolmogorov / Flye
  De novo assembler for single molecule sequencing reads using repeat graphs
  ☆813Updated 6 months ago
• marbl / Mash
  Fast genome and metagenome distance estimation using MinHash
  ☆400Updated last year
• marbl / canu
  A single molecule sequence assembler for genomes large and small.
  ☆671Updated 2 weeks ago
• rrwick / Bandage
  a Bioinformatics Application for Navigating De novo Assembly Graphs Easily
  ☆607Updated 2 years ago
• davidemms / OrthoFinder
  Phylogenetic orthology inference for comparative genomics
  ☆742Updated 4 months ago
• fbreitwieser / pavian
  🌈 Interactive analysis of metagenomics data
  ☆409Updated 5 months ago
• DerrickWood / kraken2
  The second version of the Kraken taxonomic sequence classification system
  ☆764Updated this week
• jtamames / SqueezeMeta
  A complete pipeline for metagenomic analysis
  ☆399Updated last week
• oschwengers / bakta
  Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
  ☆486Updated last week
• hyattpd / Prodigal
  Prodigal Gene Prediction Software
  ☆470Updated last year
• bxlab / metaWRAP
  MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis
  ☆415Updated last year
• ncbi / pgap
  NCBI Prokaryotic Genome Annotation Pipeline
  ☆329Updated last week
• bwa-mem2 / bwa-mem2
  The next version of bwa-mem
  ☆741Updated 7 months ago
• lh3 / seqtk
  Toolkit for processing sequences in FASTA/Q formats
  ☆1,436Updated 7 months ago
• s-andrews / FastQC
  A quality control analysis tool for high throughput sequencing data
  ☆485Updated last year
• picrust / picrust2
  Code, unit tests, and tutorials for running PICRUSt2
  ☆340Updated last week
• ablab / quast
  Genome assembly evaluation tool
  ☆423Updated 3 months ago
• tanghaibao / jcvi
  Python library to facilitate genome assembly, annotation, and comparative genomics
  ☆801Updated 3 weeks ago
• shenwei356 / taxonkit
  A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV
  ☆401Updated last month
• bactopia / bactopia
  A flexible pipeline for complete analysis of bacterial genomes
  ☆445Updated this week
• Gaius-Augustus / BRAKER
  BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…
  ☆388Updated last month
• stamatak / standard-RAxML
  ☆336Updated last week
• nanoporetech / medaka
  Sequence correction provided by ONT Research
  ☆440Updated 5 months ago
• wdecoster / NanoPlot
  Plotting scripts for long read sequencing data
  ☆461Updated last month
• DaehwanKimLab / hisat2
  Graph-based alignment (Hierarchical Graph FM index)
  ☆497Updated 3 months ago
• tseemann / snippy
  Rapid haploid variant calling and core genome alignment
  ☆498Updated 7 months ago