jiarong / VirSorter2Links
customizable pipeline to identify viral sequences from (meta)genomic data
☆263Updated 9 months ago
Alternatives and similar repositories for VirSorter2
Users that are interested in VirSorter2 are comparing it to the libraries listed below
Sorting:
- Scan contig files against PubMLST typing schemes☆242Updated 2 years ago
- geNomad: Identification of mobile genetic elements☆257Updated last month
- Rapid comparison and dereplication of genomes☆307Updated 2 months ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆223Updated 5 months ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆293Updated this week
- A tool for generating consensus long-read assemblies for bacterial genomes☆331Updated last year
- Build a partitioned pangenome graph from microbial genomes☆276Updated this week
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆219Updated last month
- An updated pipeline for pangenome investigation☆310Updated 5 months ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆381Updated 2 months ago
- fast phage annotation program☆176Updated 3 weeks ago
- Bacterial ribosomal RNA predictor☆252Updated last year
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆201Updated 7 months ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆351Updated 3 weeks ago
- Rapid large-scale prokaryote pan genome analysis☆354Updated 3 years ago
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆233Updated 2 years ago
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆153Updated 4 months ago
- Pan-genome wide association studies☆202Updated last year
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆154Updated 4 months ago
- BSR-Based Allele Calling Algorithm☆149Updated last month
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆380Updated last month
- A user-friendly workflow for phylogenomics☆219Updated 3 weeks ago
- quality filtering tool for long reads☆363Updated 2 weeks ago
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆155Updated 2 months ago
- Identifying viruses from metagenomic data by deep learning☆145Updated 3 months ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆244Updated last month
- Application and Python module for average nucleotide identity analyses of microbes.☆215Updated last month
- Eukaryotic Genome Annotation Pipeline☆361Updated last month
- Pipeline for metabolic annotation of microbial genomes☆150Updated 5 months ago
- A tool to circularize genome assemblies☆247Updated last year