jiarong / VirSorter2Links
customizable pipeline to identify viral sequences from (meta)genomic data
☆273Updated 11 months ago
Alternatives and similar repositories for VirSorter2
Users that are interested in VirSorter2 are comparing it to the libraries listed below
Sorting:
- geNomad: Identification of mobile genetic elements☆270Updated last week
- Scan contig files against PubMLST typing schemes☆253Updated 3 years ago
- Rapid comparison and dereplication of genomes☆315Updated last week
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆223Updated last month
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆301Updated last week
- An updated pipeline for pangenome investigation☆328Updated 8 months ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆236Updated 8 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆334Updated 2 months ago
- Build a partitioned pangenome graph from microbial genomes☆285Updated 3 weeks ago
- Bacterial ribosomal RNA predictor☆259Updated 2 years ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆395Updated 5 months ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆357Updated 3 months ago
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆240Updated 2 years ago
- fast phage annotation program☆184Updated last week
- quality filtering tool for long reads☆377Updated 2 months ago
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆208Updated 9 months ago
- Rapid large-scale prokaryote pan genome analysis☆358Updated 2 weeks ago
- Pan-genome wide association studies☆205Updated last year
- Eukaryotic Genome Annotation Pipeline☆366Updated 4 months ago
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆153Updated 6 months ago
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆161Updated 7 months ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆262Updated last month
- Application and Python module for average nucleotide identity analyses of microbes.☆218Updated 4 months ago
- A tool to circularize genome assemblies☆248Updated last year
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆159Updated 5 months ago
- NCBI Prokaryotic Genome Annotation Pipeline☆359Updated last week
- Identifying viruses from metagenomic data by deep learning☆148Updated 5 months ago
- A user-friendly workflow for phylogenomics☆221Updated 3 weeks ago
- Synteny and Rearrangement Identifier☆425Updated 6 months ago
- Assembly and binning of metagenomes☆251Updated this week