customizable pipeline to identify viral sequences from (meta)genomic data
☆282Nov 28, 2024Updated last year
Alternatives and similar repositories for VirSorter2
Users that are interested in VirSorter2 are comparing it to the libraries listed below
Sorting:
- Virus Identification By iteRative ANnoTation☆188Apr 15, 2024Updated last year
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆321Updated this week
- Identifying viruses from metagenomic data by deep learning☆150Jun 1, 2025Updated 9 months ago
- Read alignment statistics for metagenomics☆390Jan 16, 2026Updated last month
- geNomad: Identification of mobile genetic elements☆291Nov 10, 2025Updated 3 months ago
- Source code of the VirSorter tool, also available as an App on CyVerse/iVirus (https://de.iplantcollaborative.org/de/)☆101Oct 3, 2020Updated 5 years ago
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆226Jan 20, 2026Updated last month
- Downstream processing of VAMB binning for Viral Elucidation☆54Jul 3, 2024Updated last year
- Binning Virus Genomes from Metagenomes☆72Jul 13, 2022Updated 3 years ago
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆219Jan 27, 2025Updated last year
- Variational autoencoder for metagenomic binning☆317Feb 23, 2026Updated last week
- Assessing the quality of metagenome-derived genome bins using machine learning☆251Mar 20, 2025Updated 11 months ago
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆582Feb 21, 2026Updated 2 weeks ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆87Dec 27, 2024Updated last year
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆607Feb 18, 2026Updated 2 weeks ago
- Rapid comparison and dereplication of genomes☆327Nov 10, 2025Updated 3 months ago
- viralVerify: viral contig verification tool☆74Feb 19, 2026Updated 2 weeks ago
- Bioinformatics program inStrain☆181May 9, 2025Updated 9 months ago
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆147Updated this week
- Systematic search of all known anti-phage systems.☆146Jan 22, 2026Updated last month
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆181Feb 26, 2026Updated last week
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆403Updated this week
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆178Jan 7, 2026Updated last month
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆297Feb 3, 2026Updated last month
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆460Jul 28, 2023Updated 2 years ago
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆161Feb 13, 2026Updated 3 weeks ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆236Oct 12, 2025Updated 4 months ago
- Fast Whole-Genome Similarity (ANI) Estimation☆448Dec 16, 2025Updated 2 months ago
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆402Jan 12, 2026Updated last month
- VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data☆137Apr 9, 2020Updated 5 years ago
- fast phage annotation program☆198Feb 1, 2026Updated last month
- DAS Tool☆168May 2, 2024Updated last year
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆394Dec 13, 2025Updated 2 months ago
- A Perl script allowing to identify CRISPR arrays and associated Cas proteins from DNA sequences☆100Jul 11, 2023Updated 2 years ago
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆44Apr 4, 2023Updated 2 years ago
- AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and p…