jiarong / VirSorter2Links
customizable pipeline to identify viral sequences from (meta)genomic data
☆280Updated last year
Alternatives and similar repositories for VirSorter2
Users that are interested in VirSorter2 are comparing it to the libraries listed below
Sorting:
- geNomad: Identification of mobile genetic elements☆283Updated 2 months ago
- Rapid comparison and dereplication of genomes☆326Updated 2 months ago
- Scan contig files against PubMLST typing schemes☆262Updated 3 weeks ago
- Bacterial ribosomal RNA predictor☆276Updated 3 weeks ago
- Build a partitioned pangenome graph from microbial genomes☆292Updated last month
- A tool for generating consensus long-read assemblies for bacterial genomes☆339Updated 4 months ago
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆224Updated last week
- An updated pipeline for pangenome investigation☆336Updated 2 weeks ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆246Updated 10 months ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆316Updated this week
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆401Updated 7 months ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆365Updated 5 months ago
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆216Updated last year
- Pan-genome wide association studies☆205Updated last year
- Rapid large-scale prokaryote pan genome analysis☆367Updated 2 months ago
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆250Updated last month
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆402Updated 2 weeks ago
- NCBI Prokaryotic Genome Annotation Pipeline☆364Updated 2 months ago
- Eukaryotic Genome Annotation Pipeline☆378Updated last week
- A tool to circularize genome assemblies☆250Updated last year
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆156Updated 9 months ago
- fast phage annotation program☆191Updated this week
- Synteny and Rearrangement Identifier☆444Updated 9 months ago
- Virus Identification By iteRative ANnoTation☆184Updated last year
- Assembly and binning of metagenomes☆270Updated this week
- A user-friendly workflow for phylogenomics☆225Updated this week
- Identifying viruses from metagenomic data by deep learning☆150Updated 8 months ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆285Updated 3 months ago
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆164Updated 9 months ago
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).☆231Updated last week