Fast genome-wide functional annotation through orthology assignment
☆743May 22, 2026Updated 3 weeks ago
Alternatives and similar repositories for eggnog-mapper
Users that are interested in eggnog-mapper are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Accelerated BLAST compatible local sequence aligner.☆1,301Updated this week
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆606May 20, 2026Updated 3 weeks ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆409Mar 2, 2026Updated 3 months ago
- Prodigal Gene Prediction Software☆542Jan 23, 2024Updated 2 years ago
- Genome-scale protein function classification☆383Updated this week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆650May 15, 2026Updated 3 weeks ago
- Rapid comparison and dereplication of genomes☆346Nov 10, 2025Updated 7 months ago
- Fast Whole-Genome Similarity (ANI) Estimation☆463Dec 16, 2025Updated 5 months ago
- Mummer alignment tool☆561Feb 4, 2025Updated last year
- Phylogenetic orthology inference for comparative genomics☆858Jul 15, 2025Updated 10 months ago
- Rapid prokaryotic genome annotation☆986Jan 6, 2026Updated 5 months ago
- MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics☆207Aug 25, 2025Updated 9 months ago
- An updated pipeline for pangenome investigation☆361Jun 2, 2026Updated last week
- hybrid assembly pipeline for bacterial genomes☆643Jul 25, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Read alignment statistics for metagenomics☆399Apr 8, 2026Updated 2 months ago
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆472Jul 28, 2023Updated 2 years ago
- Python library to facilitate genome assembly, annotation, and comparative genomics☆917May 2, 2026Updated last month
- Ultra-fast and memory-efficient (meta-)genome assembler☆719Oct 28, 2025Updated 7 months ago
- SPAdes Genome Assembler☆942Updated this week
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆231Apr 1, 2026Updated 2 months ago
- Microbial RNA annotation☆296Apr 12, 2026Updated 2 months ago
- MMseqs2: ultra fast and sensitive search and clustering suite☆2,078Updated this week
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆334Jun 3, 2026Updated last week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Genome annotation with AUGUSTUS☆334May 30, 2026Updated 2 weeks ago
- Synteny and Rearrangement Identifier☆471May 20, 2026Updated 3 weeks ago
- A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV☆472May 28, 2026Updated 2 weeks ago
- A tool to circularize genome assemblies☆257Apr 6, 2024Updated 2 years ago
- geNomad: Identification of mobile genetic elements☆316Mar 29, 2026Updated 2 months ago
- Automatically exported from code.google.com/p/cdhit☆730Oct 11, 2022Updated 3 years ago
- The second version of the Kraken taxonomic sequence classification system☆912Updated this week
- Eukaryotic Genome Annotation Pipeline☆387Jun 7, 2026Updated last week
- Rapid large-scale prokaryote pan genome analysis☆379Nov 3, 2025Updated 7 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Bioinformatics program inStrain☆188Mar 12, 2026Updated 3 months ago
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆421May 20, 2026Updated 3 weeks ago
- Scripts to download genomes from the NCBI FTP servers☆1,079Apr 7, 2026Updated 2 months ago
- A cross-platform and ultrafast toolkit for FASTA/Q file manipulation☆1,569Jun 1, 2026Updated last week
- DAS Tool☆174May 2, 2024Updated 2 years ago
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆227Mar 24, 2026Updated 2 months ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆566Feb 14, 2024Updated 2 years ago