Fast genome-wide functional annotation through orthology assignment
☆755May 22, 2026Updated 2 months ago
Alternatives and similar repositories for eggnog-mapper
Users that are interested in eggnog-mapper are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Accelerated BLAST compatible local sequence aligner.☆1,312Jul 13, 2026Updated last week
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆616May 20, 2026Updated 2 months ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆409Mar 2, 2026Updated 4 months ago
- Prodigal Gene Prediction Software☆550Jan 23, 2024Updated 2 years ago
- Genome-scale protein function classification☆385Jun 30, 2026Updated 3 weeks ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆664Jul 10, 2026Updated 2 weeks ago
- Rapid comparison and dereplication of genomes☆349Jul 16, 2026Updated last week
- Fast Whole-Genome Similarity (ANI) Estimation☆471Dec 16, 2025Updated 7 months ago
- Mummer alignment tool☆567Feb 4, 2025Updated last year
- Phylogenetic orthology inference for comparative genomics☆865Jul 15, 2025Updated last year
- Rapid prokaryotic genome annotation☆992Jan 6, 2026Updated 6 months ago
- MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics☆208Aug 25, 2025Updated 10 months ago
- An updated pipeline for pangenome investigation☆367Jul 2, 2026Updated 3 weeks ago
- hybrid assembly pipeline for bacterial genomes☆648Jul 7, 2026Updated 2 weeks ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Read alignment statistics for metagenomics☆401Jul 10, 2026Updated 2 weeks ago
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆474Jul 28, 2023Updated 2 years ago
- Python library to facilitate genome assembly, annotation, and comparative genomics☆924Updated this week
- Ultra-fast and memory-efficient (meta-)genome assembler☆721Oct 28, 2025Updated 8 months ago
- SPAdes Genome Assembler☆953Jun 16, 2026Updated last month
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆233Jul 9, 2026Updated 2 weeks ago
- Microbial RNA annotation☆306Apr 12, 2026Updated 3 months ago
- geNomad: Identification of mobile genetic elements☆325Mar 29, 2026Updated 3 months ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆335Jun 3, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Genome annotation with AUGUSTUS☆337May 30, 2026Updated last month
- MMseqs2: ultra fast and sensitive search and clustering suite☆2,110Jul 16, 2026Updated last week
- Synteny and Rearrangement Identifier☆480Jul 1, 2026Updated 3 weeks ago
- A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV☆475Jul 15, 2026Updated last week
- Eukaryotic Genome Annotation Pipeline☆393Jul 12, 2026Updated last week
- The second version of the Kraken taxonomic sequence classification system☆926Jul 9, 2026Updated 2 weeks ago
- Automatically exported from code.google.com/p/cdhit☆734Oct 11, 2022Updated 3 years ago
- A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0☆267Updated this week
- Rapid large-scale prokaryote pan genome analysis☆378Nov 3, 2025Updated 8 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A tool to circularize genome assemblies☆257Apr 6, 2024Updated 2 years ago
- Bioinformatics program inStrain☆191Mar 12, 2026Updated 4 months ago
- Scripts to download genomes from the NCBI FTP servers☆1,084Apr 7, 2026Updated 3 months ago
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆425May 20, 2026Updated 2 months ago
- A cross-platform and ultrafast toolkit for FASTA/Q file manipulation☆1,583Jul 8, 2026Updated 2 weeks ago
- DAS Tool☆177May 2, 2024Updated 2 years ago
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆228Mar 24, 2026Updated 4 months ago