eggnogdb / eggnog-mapper
Fast genome-wide functional annotation through orthology assignment
☆596Updated 10 months ago
Alternatives and similar repositories for eggnog-mapper:
Users that are interested in eggnog-mapper are comparing it to the libraries listed below
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆492Updated last week
- ☆238Updated 9 months ago
- De novo assembler for single molecule sequencing reads using repeat graphs☆814Updated 6 months ago
- A complete pipeline for metagenomic analysis☆399Updated last week
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆391Updated 2 months ago
- Phylogenetic orthology inference for comparative genomics☆745Updated 5 months ago
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆416Updated last year
- Gene cluster comparison figure generator☆557Updated 3 months ago
- Eukaryotic Genome Annotation Pipeline☆338Updated 2 weeks ago
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆400Updated 2 months ago
- hybrid assembly pipeline for bacterial genomes☆584Updated 7 months ago
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆328Updated last week
- TransDecoder source☆285Updated 5 months ago
- Rapid large-scale prokaryote pan genome analysis☆338Updated 2 years ago
- A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…☆491Updated last week
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆362Updated 6 months ago
- Sequence correction provided by ONT Research☆443Updated 5 months ago
- ATLAS - Three commands to start analyzing your metagenome data☆384Updated this week
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆586Updated this week
- Transcript assembly and quantification for RNA-Seq☆421Updated this week
- A flexible pipeline for complete analysis of bacterial genomes☆445Updated this week
- NCBI Prokaryotic Genome Annotation Pipeline☆330Updated last week
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆221Updated 4 years ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆495Updated last year
- adapter trimmer for Oxford Nanopore reads☆353Updated 10 months ago
- Fast and accurate de novo assembler for long reads☆382Updated 10 months ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆330Updated last year
- Genome-scale protein function classification☆316Updated last week
- bioBakery tools for meta'omic profiling☆273Updated 5 months ago
- Genome assembly evaluation tool☆422Updated 4 months ago