eggnogdb / eggnog-mapperLinks
Fast genome-wide functional annotation through orthology assignment
☆687Updated 7 months ago
Alternatives and similar repositories for eggnog-mapper
Users that are interested in eggnog-mapper are comparing it to the libraries listed below
Sorting:
- Phylogenetic orthology inference for comparative genomics☆823Updated 6 months ago
- Gene cluster comparison figure generator☆631Updated 3 weeks ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆591Updated last week
- Rapid prokaryotic genome annotation☆949Updated last week
- Prodigal Gene Prediction Software☆524Updated last year
- A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV☆454Updated 2 weeks ago
- Python library to facilitate genome assembly, annotation, and comparative genomics☆883Updated 3 weeks ago
- The second version of the Kraken taxonomic sequence classification system☆861Updated 2 weeks ago
- A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…☆536Updated 4 months ago
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆450Updated last year
- ☆284Updated 3 months ago
- De novo assembler for single molecule sequencing reads using repeat graphs☆889Updated 8 months ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆443Updated 2 months ago
- Genome assembly evaluation tool☆489Updated last year
- Bioinformatics code libraries and scripts☆555Updated 5 months ago
- A complete pipeline for metagenomic analysis☆441Updated last month
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆454Updated 2 years ago
- Genome-scale protein function classification☆362Updated last week
- Mummer alignment tool☆544Updated 11 months ago
- Mass screening of contigs for antimicrobial and virulence genes☆468Updated last month
- A flexible pipeline for complete analysis of bacterial genomes☆494Updated last month
- hybrid assembly pipeline for bacterial genomes☆631Updated last year
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆570Updated last week
- Eukaryotic Genome Annotation Pipeline☆375Updated last week
- NCBI Prokaryotic Genome Annotation Pipeline☆363Updated 2 months ago
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆391Updated last month
- Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/☆553Updated this week
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆718Updated 10 months ago
- SPAdes Genome Assembler☆898Updated this week
- adapter trimmer for Oxford Nanopore reads☆379Updated last year