Alternatives and similar repositories for DAS_Tool

Users that are interested in DAS_Tool are comparing it to the libraries listed below

• bhattlab / MGEfinder
  A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.
  ☆121Updated last year
• genomicsITER / NanoCLUST
  NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads
  ☆109Updated last year
• gbouras13 / hybracter
  Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.
  ☆127Updated 3 weeks ago
• chklovski / CheckM2
  Assessing the quality of metagenome-derived genome bins using machine learning
  ☆211Updated 2 months ago
• HRGV / phyloFlash
  phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.
  ☆85Updated last year
• AdmiralenOla / Scoary
  Pan-genome wide association studies
  ☆198Updated last year
• wwood / singlem
  Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes
  ☆144Updated 2 weeks ago
• epi2me-labs / wf-metagenomics
  Metagenomic classification of long-read sequencing data
  ☆83Updated 3 weeks ago
• tseemann / snp-dists
  Pairwise SNP distance matrix from a FASTA sequence alignment
  ☆136Updated last year
• cruizperez / MicrobeAnnotator
  Pipeline for metabolic annotation of microbial genomes
  ☆147Updated 2 months ago
• ncbi / fcs
  Foreign Contamination Screening caller scripts and documentation
  ☆129Updated 2 months ago
• SionBayliss / PIRATE
  A toolbox for pangenome analysis and threshold evaluation.
  ☆97Updated 2 years ago
• MaestSi / MetONTIIME
  A Meta-barcoding pipeline for analysing ONT data in QIIME2 framework
  ☆107Updated 2 months ago
• nmquijada / tormes
  Making whole bacterial genome sequencing data analysis easy
  ☆106Updated last month
• eead-csic-compbio / get_homologues
  GET_HOMOLOGUES: a versatile software package for pan-genome analysis
  ☆115Updated 3 months ago
• DRL / blobtools
  Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets
  ☆202Updated 9 months ago
• tseemann / nullarbor
  "Reads to report" for public health and clinical microbiology
  ☆139Updated last year
• donovan-h-parks / CompareM
  A toolbox for comparative genomics.
  ☆103Updated 4 years ago
• phac-nml / mob-suite
  MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies
  ☆148Updated last month
• klebgenomics / Kleborate
  ☆125Updated this week
• MrOlm / inStrain
  Bioinformatics program inStrain
  ☆169Updated 3 weeks ago
• nickjcroucher / gubbins
  Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
  ☆193Updated 2 months ago
• katholt / srst2
  Short Read Sequence Typing for Bacterial Pathogens
  ☆131Updated 3 years ago
• rrwick / Autocycler
  A tool for generating consensus long-read assemblies for bacterial genomes
  ☆137Updated this week
• rpetit3 / dragonflye
  Assemble bacterial isolate genomes from Nanopore reads
  ☆126Updated 4 months ago
• neherlab / pan-genome-analysis
  Processing pipeline for pan-genome visulization and exploration
  ☆139Updated last year
• ncbi / SKESA
  SKESA assembler
  ☆119Updated 7 months ago
• AstrobioMike / GToTree
  A user-friendly workflow for phylogenomics
  ☆213Updated last week
• sanger-pathogens / circlator
  A tool to circularize genome assemblies
  ☆242Updated last year
• lskatz / mashtree
  Create a tree using Mash distances
  ☆167Updated last year