cmks / DAS_Tool
DAS Tool
☆146Updated 10 months ago
Alternatives and similar repositories for DAS_Tool:
Users that are interested in DAS_Tool are comparing it to the libraries listed below
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆115Updated last year
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆139Updated 5 months ago
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆113Updated 2 weeks ago
- Metagenomic classification of long-read sequencing data☆76Updated this week
- BSR-Based Allele Calling Algorithm☆140Updated last week
- A Meta-barcoding pipeline for analysing ONT data in QIIME2 framework☆96Updated 9 months ago
- Pan-genome wide association studies☆190Updated 9 months ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆120Updated last week
- Pipeline for metabolic annotation of microbial genomes☆143Updated 8 months ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆198Updated this week
- phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.☆82Updated last year
- Bioinformatics program inStrain☆159Updated 10 months ago
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆138Updated last month
- Foreign Contamination Screening caller scripts and documentation☆128Updated 2 weeks ago
- Pairwise SNP distance matrix from a FASTA sequence alignment☆130Updated last year
- Novelty-inclusive microbial community profiling of shotgun metagenomes☆140Updated 2 weeks ago
- Create a tree using Mash distances☆159Updated last year
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆214Updated this week
- Assemble bacterial isolate genomes from Nanopore reads☆122Updated last month
- a short-read polishing tool for long-read assemblies☆155Updated 9 months ago
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆204Updated 3 months ago
- An updated pipeline for pangenome investigation☆288Updated 2 weeks ago
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆114Updated 9 months ago
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆131Updated 3 weeks ago
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆133Updated 3 months ago
- NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads☆107Updated last year
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆121Updated 4 months ago
- "Reads to report" for public health and clinical microbiology☆139Updated last year
- A user-friendly workflow for phylogenomics☆209Updated this week
- ☆123Updated last month