chklovski / CheckM2Links
Assessing the quality of metagenome-derived genome bins using machine learning
☆232Updated 7 months ago
Alternatives and similar repositories for CheckM2
Users that are interested in CheckM2 are comparing it to the libraries listed below
Sorting:
- geNomad: Identification of mobile genetic elements☆266Updated last month
- fast phage annotation program☆182Updated 3 weeks ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆193Updated last month
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆257Updated 2 weeks ago
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆157Updated 6 months ago
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆206Updated 9 months ago
- ☆147Updated last year
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆222Updated last week
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆99Updated 6 months ago
- DAS Tool☆159Updated last year
- Identifying viruses from metagenomic data by deep learning☆147Updated 4 months ago
- Pipeline for metabolic annotation of microbial genomes☆150Updated 7 months ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆124Updated 2 years ago
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆158Updated 4 months ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆140Updated 2 months ago
- HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.☆136Updated 2 years ago
- Scan contig files against PubMLST typing schemes☆250Updated 3 years ago
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆152Updated 6 months ago
- customizable pipeline to identify viral sequences from (meta)genomic data☆271Updated 11 months ago
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆195Updated last month
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆225Updated 2 weeks ago
- ☆117Updated last year
- Pan-genome wide association studies☆204Updated last year
- BSR-Based Allele Calling Algorithm☆148Updated last month
- OPERA-MS - Hybrid Metagenomic Assembler☆100Updated last year
- snipit: summarise snps relative to your reference sequence☆162Updated last month
- Virus Identification By iteRative ANnoTation☆174Updated last year
- Ultra-fast preprocessing and quality control for long-read sequencing data☆191Updated last month
- An updated pipeline for pangenome investigation☆317Updated 7 months ago
- Find endogenous viral elements in genomes☆17Updated last month