Alternatives and similar repositories for CheckM2

Users that are interested in CheckM2 are comparing it to the libraries listed below

• apcamargo / genomad
  geNomad: Identification of mobile genetic elements
  ☆266Updated last month
• gbouras13 / pharokka
  fast phage annotation program
  ☆182Updated 3 weeks ago
• rrwick / Autocycler
  A tool for generating consensus long-read assemblies for bacterial genomes
  ☆193Updated last month
• bluenote-1577 / sylph
  ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.
  ☆257Updated 2 weeks ago
• phac-nml / mob-suite
  MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies
  ☆157Updated 6 months ago
• AnantharamanLab / METABOLIC
  A scalable high-throughput metabolic and biogeochemical functional trait profiler
  ☆206Updated 9 months ago
• rrwick / Perfect-bacterial-genome-tutorial
  ☆147Updated last year
• MGXlab / CAT_pack
  CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…
  ☆222Updated last week
• xiezhq / ISEScan
  A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome
  ☆99Updated 6 months ago
• cmks / DAS_Tool
  DAS Tool
  ☆159Updated last year
• jessieren / DeepVirFinder
  Identifying viruses from metagenomic data by deep learning
  ☆147Updated 4 months ago
• cruizperez / MicrobeAnnotator
  Pipeline for metabolic annotation of microbial genomes
  ☆150Updated 7 months ago
• bhattlab / MGEfinder
  A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.
  ☆124Updated 2 years ago
• biobakery / phylophlan
  Precise phylogenetic analysis of microbial isolates and genomes from metagenomes
  ☆158Updated 4 months ago
• gbouras13 / hybracter
  Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.
  ☆140Updated 2 months ago
• qiyunlab / HGTector
  HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.
  ☆136Updated 2 years ago
• tseemann / mlst
  Scan contig files against PubMLST typing schemes
  ☆250Updated 3 years ago
• linnabrown / run_dbcan
  Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…
  ☆152Updated 6 months ago
• jiarong / VirSorter2
  customizable pipeline to identify viral sequences from (meta)genomic data
  ☆271Updated 11 months ago
• PacificBiosciences / pb-metagenomics-tools
  Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics
  ☆195Updated last month
• bluenote-1577 / skani
  Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.
  ☆225Updated 2 weeks ago
• EMBL-PKU / BASALT
  ☆117Updated last year
• AdmiralenOla / Scoary
  Pan-genome wide association studies
  ☆204Updated last year
• B-UMMI / chewBBACA
  BSR-Based Allele Calling Algorithm
  ☆148Updated last month
• CSB5 / OPERA-MS
  OPERA-MS - Hybrid Metagenomic Assembler
  ☆100Updated last year
• aineniamh / snipit
  snipit: summarise snps relative to your reference sequence
  ☆162Updated last month
• AnantharamanLab / VIBRANT
  Virus Identification By iteRative ANnoTation
  ☆174Updated last year
• OpenGene / fastplong
  Ultra-fast preprocessing and quality control for long-read sequencing data
  ☆191Updated last month
• gtonkinhill / panaroo
  An updated pipeline for pangenome investigation
  ☆317Updated 7 months ago
• thackl / detectEVE
  Find endogenous viral elements in genomes
  ☆17Updated last month