RasmussenLab / vambLinks
Variational autoencoder for metagenomic binning
☆307Updated last month
Alternatives and similar repositories for vamb
Users that are interested in vamb are comparing it to the libraries listed below
Sorting:
- Rapid comparison and dereplication of genomes☆321Updated last month
- CAMISIM: Simulating metagenomes and microbial communities☆219Updated last week
- Read alignment statistics for metagenomics☆383Updated last month
- geNomad: Identification of mobile genetic elements☆275Updated last month
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆303Updated last week
- customizable pipeline to identify viral sequences from (meta)genomic data☆275Updated last year
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆224Updated last month
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆154Updated 7 months ago
- An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…☆253Updated last year
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆267Updated 2 months ago
- Bacterial ribosomal RNA predictor☆263Updated this week
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).☆227Updated 2 weeks ago
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆331Updated 9 months ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆239Updated 8 months ago
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆159Updated 5 months ago
- Scan contig files against PubMLST typing schemes☆253Updated this week
- An updated pipeline for pangenome investigation☆332Updated 9 months ago
- fast phage annotation program☆187Updated 2 weeks ago
- Build a partitioned pangenome graph from microbial genomes☆290Updated 3 weeks ago
- A tool to circularize genome assemblies☆249Updated last year
- Identifying viruses from metagenomic data by deep learning☆149Updated 6 months ago
- A user-friendly workflow for phylogenomics☆222Updated 3 weeks ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆398Updated 6 months ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆360Updated 4 months ago
- Pan-genome wide association studies☆205Updated last year
- Bioinformatics program inStrain☆180Updated 7 months ago
- Assembly and binning of metagenomes☆258Updated last week
- Eukaryotic Genome Annotation Pipeline☆369Updated 5 months ago
- Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.☆180Updated 2 months ago
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆162Updated 7 months ago