Variational autoencoder for metagenomic binning
☆322Apr 27, 2026Updated this week
Alternatives and similar repositories for vamb
Users that are interested in vamb are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Downstream processing of VAMB binning for Viral Elucidation☆55Jul 3, 2024Updated last year
- SemiBin: metagenomics binning with self-supervised deep learning☆159Updated this week
- Read alignment statistics for metagenomics☆396Apr 8, 2026Updated 3 weeks ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆254Mar 20, 2025Updated last year
- DAS Tool☆172May 2, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A hybrid assembly and MAG recovery pipeline (and more!)☆106Updated this week
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆332Apr 20, 2026Updated last week
- Bioinformatics program inStrain☆184Mar 12, 2026Updated last month
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆302Feb 3, 2026Updated 2 months ago
- ☆75Mar 10, 2024Updated 2 years ago
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆229Apr 1, 2026Updated 3 weeks ago
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆593Apr 21, 2026Updated last week
- geNomad: Identification of mobile genetic elements☆303Mar 29, 2026Updated last month
- customizable pipeline to identify viral sequences from (meta)genomic data☆288Nov 28, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆64Feb 27, 2024Updated 2 years ago
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆182Mar 17, 2026Updated last month
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆249Oct 12, 2025Updated 6 months ago
- Python package for detection of chimerism and contamination in prokaryotic genomes.☆89Mar 12, 2026Updated last month
- motus - a tool for marker gene-based OTU (mOTU) profiling☆173Mar 13, 2026Updated last month
- Binning Virus Genomes from Metagenomes☆73Jul 13, 2022Updated 3 years ago
- Virus Identification By iteRative ANnoTation☆194Apr 15, 2024Updated 2 years ago
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆467Jul 28, 2023Updated 2 years ago
- sensitive and precise assembly of short sequencing reads☆166Oct 11, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆185Apr 16, 2026Updated 2 weeks ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆633Feb 18, 2026Updated 2 months ago
- Rapid comparison and dereplication of genomes☆336Nov 10, 2025Updated 5 months ago
- Improvement of metagenome-assembled genomes☆57Mar 17, 2020Updated 6 years ago
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆213Mar 3, 2026Updated last month
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆225Mar 24, 2026Updated last month
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆148Apr 21, 2026Updated last week
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆75Mar 3, 2026Updated last month
- A toolbox for improving metagenome-assembled genomes.☆64Jun 2, 2021Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆69Sep 26, 2024Updated last year
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆409Mar 2, 2026Updated last month
- ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs☆37Oct 24, 2025Updated 6 months ago
- More scalable dereplication for metagenome assembled genomes☆80Mar 8, 2026Updated last month
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆214Updated this week
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆162Apr 23, 2025Updated last year
- CAMISIM: Simulating metagenomes and microbial communities☆224Apr 21, 2026Updated last week