RasmussenLab / vambLinks
Variational autoencoder for metagenomic binning
☆296Updated last month
Alternatives and similar repositories for vamb
Users that are interested in vamb are comparing it to the libraries listed below
Sorting:
- Rapid comparison and dereplication of genomes☆304Updated 2 months ago
- Read alignment statistics for metagenomics☆362Updated 2 weeks ago
- CAMISIM: Simulating metagenomes and microbial communities☆211Updated 2 weeks ago
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).☆208Updated 11 months ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆289Updated last week
- customizable pipeline to identify viral sequences from (meta)genomic data☆261Updated 8 months ago
- Bacterial ribosomal RNA predictor☆249Updated last year
- Build a partitioned pangenome graph from microbial genomes☆275Updated this week
- An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…☆244Updated last year
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆153Updated 3 months ago
- geNomad: Identification of mobile genetic elements☆252Updated 3 weeks ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆237Updated last month
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆316Updated 5 months ago
- A user-friendly workflow for phylogenomics☆217Updated this week
- Fast Whole-Genome Similarity (ANI) Estimation☆422Updated 2 weeks ago
- A tool to circularize genome assemblies☆245Updated last year
- Eukaryotic Genome Annotation Pipeline☆359Updated last month
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆379Updated last week
- Scan contig files against PubMLST typing schemes☆239Updated 2 years ago
- bioBakery tools for meta'omic profiling☆285Updated 2 months ago
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆358Updated last month
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆219Updated last month
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆347Updated last week
- Pan-genome wide association studies☆200Updated last year
- IQ-TREE software version 2: phylogenetics by maximum likelihood☆297Updated 3 months ago
- An updated pipeline for pangenome investigation☆308Updated 5 months ago
- A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0☆217Updated this week
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆379Updated last month
- Download files from NCBI Entrez by accession☆127Updated 11 months ago
- NCBI Prokaryotic Genome Annotation Pipeline☆348Updated 2 weeks ago