jenniferlu717 / BrackenLinks
Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.
☆322Updated 8 months ago
Alternatives and similar repositories for Bracken
Users that are interested in Bracken are comparing it to the libraries listed below
Sorting:
- Rapid comparison and dereplication of genomes☆313Updated 4 months ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆355Updated 3 months ago
- Bacterial ribosomal RNA predictor☆258Updated 2 years ago
- Fast taxonomic classification of metagenomic sequencing reads using a protein reference database☆295Updated 6 months ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆392Updated 4 months ago
- quality filtering tool for long reads☆374Updated last month
- An updated pipeline for pangenome investigation☆317Updated 7 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆333Updated last month
- Rapid large-scale prokaryote pan genome analysis☆355Updated 3 years ago
- Read alignment statistics for metagenomics☆377Updated last week
- Scan contig files against PubMLST typing schemes☆250Updated 3 years ago
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆237Updated 2 years ago
- A tool to circularize genome assemblies☆248Updated last year
- Assembly and binning of metagenomes☆249Updated this week
- A complete pipeline for metagenomic analysis☆435Updated last month
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆222Updated last week
- Filtering and trimming of long read sequencing data☆208Updated 2 years ago
- Eukaryotic Genome Annotation Pipeline☆366Updated 3 months ago
- Build a partitioned pangenome graph from microbial genomes☆284Updated last week
- customizable pipeline to identify viral sequences from (meta)genomic data☆271Updated 11 months ago
- Tool to plot synteny and structural rearrangements between genomes☆326Updated 6 months ago
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆445Updated 2 years ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆242Updated 4 years ago
- Fast Whole-Genome Similarity (ANI) Estimation☆432Updated 3 months ago
- 🌈 Interactive analysis of metagenomics data☆427Updated last month
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆392Updated last month
- Tools for fast and flexible genome assembly scaffolding and improvement☆534Updated last year
- Classifier for metagenomic sequences☆266Updated 4 months ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆283Updated last year
- 🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results☆240Updated last year