Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.
☆358Mar 16, 2026Updated 5 months ago
Alternatives and similar repositories for Bracken
Users that are interested in Bracken are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆382Aug 1, 2025Updated last year
- The second version of the Kraken taxonomic sequence classification system☆931Aug 11, 2026Updated last week
- 🌈 Interactive analysis of metagenomics data☆455Sep 17, 2025Updated 11 months ago
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆421Aug 5, 2026Updated last week
- motus - a tool for marker gene-based OTU (mOTU) profiling☆180Jul 17, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- 🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results☆252Jan 18, 2024Updated 2 years ago
- Interactively explore metagenomes and more from a web browser.☆504Dec 22, 2021Updated 4 years ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆666Aug 7, 2026Updated last week
- Read alignment statistics for metagenomics☆405Jul 10, 2026Updated last month
- Rapid comparison and dereplication of genomes☆352Jul 16, 2026Updated last month
- Classifier for metagenomic sequences☆278Apr 15, 2026Updated 4 months ago
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆61Feb 7, 2026Updated 6 months ago
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).☆250Jul 10, 2026Updated last month
- CAMISIM: Simulating metagenomes and microbial communities☆230Jul 16, 2026Updated last month
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆475Jul 28, 2023Updated 3 years ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆411Mar 2, 2026Updated 5 months ago
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆617May 20, 2026Updated 2 months ago
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆428May 20, 2026Updated 2 months ago
- AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and p…☆383Aug 10, 2026Updated last week
- hybrid assembly pipeline for bacterial genomes☆650Jul 29, 2026Updated 2 weeks ago
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆169Jun 10, 2026Updated 2 months ago
- Antimicrobial Resistance Identification By Assembly☆186Oct 12, 2023Updated 2 years ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆336Updated this week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Fast taxonomic classification of metagenomic sequencing reads using a protein reference database☆306Jun 9, 2026Updated 2 months ago
- SPAdes Genome Assembler☆955Jun 16, 2026Updated 2 months ago
- Kraken taxonomic sequence classification system☆227Sep 27, 2021Updated 4 years ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆316Feb 3, 2026Updated 6 months ago
- Prodigal Gene Prediction Software☆551Jan 23, 2024Updated 2 years ago
- Variational autoencoder for metagenomic binning☆331Apr 27, 2026Updated 3 months ago
- ATLAS - Three commands to start analyzing your metagenome data☆406May 28, 2026Updated 2 months ago
- bioBakery tools for meta'omic profiling☆322Aug 4, 2026Updated 2 weeks ago
- DAS Tool☆177May 2, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Fast genome-wide functional annotation through orthology assignment☆763Updated this week
- A complete pipeline for metagenomic analysis☆451Aug 11, 2026Updated last week
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆234Jul 29, 2026Updated 2 weeks ago
- Mass screening of contigs for antimicrobial and virulence genes☆507Jul 17, 2026Updated last month
- Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins☆221Aug 27, 2025Updated 11 months ago
- Code, unit tests, and tutorials for running PICRUSt2☆396Nov 27, 2025Updated 8 months ago
- A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV☆478Jul 15, 2026Updated last month