sourmash-bio / sourmashLinks
Quickly search, compare, and analyze genomic and metagenomic data sets.
☆522Updated this week
Alternatives and similar repositories for sourmash
Users that are interested in sourmash are comparing it to the libraries listed below
Sorting:
- A fast multi-threaded k-mer counter☆512Updated last year
- Read alignment statistics for metagenomics☆367Updated 2 weeks ago
- Fast genome and metagenome distance estimation using MinHash☆418Updated last year
- hybrid assembly pipeline for bacterial genomes☆613Updated last year
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆321Updated 6 months ago
- Fast Whole-Genome Similarity (ANI) Estimation☆428Updated last month
- ATLAS - Three commands to start analyzing your metagenome data☆399Updated 2 weeks ago
- 🌈 Interactive analysis of metagenomics data☆423Updated last month
- RAxML Next Generation: faster, easier-to-use and more flexible☆437Updated 2 weeks ago
- Mummer alignment tool☆524Updated 7 months ago
- A single molecule sequence assembler for genomes large and small.☆689Updated 2 weeks ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆633Updated 2 years ago
- Structural variation caller using third generation sequencing☆615Updated 3 weeks ago
- Fast taxonomic classification of metagenomic sequencing reads using a protein reference database☆289Updated 4 months ago
- A complete pipeline for metagenomic analysis☆428Updated 2 weeks ago
- A flexible pipeline for complete analysis of bacterial genomes☆472Updated last week
- Assemble large genomes using short reads☆322Updated 5 months ago
- Source for the QIIME 2 Framework (Q2F).☆513Updated last week
- Versatile open-source tool for microbiome analysis☆718Updated 2 weeks ago
- Welcome to the mothur project, initiated by Dr. Patrick Schloss and his software development team in the Department of Microbiology & Imm…☆272Updated last month
- Genome assembly evaluation tool☆464Updated 10 months ago
- Efficient pythonic random access to fasta subsequences☆478Updated 2 weeks ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆529Updated last year
- Plotting scripts for long read sequencing data☆502Updated 3 weeks ago
- Bayesian haplotype-based genetic polymorphism discovery and genotyping.☆842Updated 3 months ago
- The second version of the Kraken taxonomic sequence classification system☆823Updated 2 weeks ago
- Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight…☆851Updated this week
- Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.☆382Updated 3 months ago
- A genome visualization python package for comparative genomics☆360Updated 3 weeks ago
- Interactively explore metagenomes and more from a web browser.☆487Updated 3 years ago