sourmash-bio / sourmash
Quickly search, compare, and analyze genomic and metagenomic data sets.
☆489Updated this week
Alternatives and similar repositories for sourmash:
Users that are interested in sourmash are comparing it to the libraries listed below
- hybrid assembly pipeline for bacterial genomes☆584Updated 7 months ago
- Read alignment statistics for metagenomics☆323Updated last week
- NCBI Prokaryotic Genome Annotation Pipeline☆328Updated this week
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆352Updated last week
- Genome assembly evaluation tool☆423Updated 3 months ago
- Fast genome and metagenome distance estimation using MinHash☆399Updated last year
- ATLAS - Three commands to start analyzing your metagenome data☆384Updated 2 months ago
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆303Updated last week
- Tools for fast and flexible genome assembly scaffolding and improvement☆494Updated last year
- AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and p…☆295Updated 2 weeks ago
- Plotting scripts for long read sequencing data☆461Updated last month
- Rapid large-scale prokaryote pan genome analysis☆336Updated 2 years ago
- Mummer alignment tool☆487Updated last month
- Structural variation caller using third generation sequencing☆581Updated 3 weeks ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆316Updated 9 months ago
- Plot structural variant signals from many BAMs and CRAMs☆540Updated 7 months ago
- Rapid comparison and dereplication of genomes☆276Updated 2 months ago
- Nanopore sequence read simulator☆260Updated last week
- A single molecule sequence assembler for genomes large and small.☆671Updated last week
- A flexible pipeline for complete analysis of bacterial genomes☆445Updated this week
- HyPhy: Hypothesis testing using Phylogenies☆228Updated last week
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆486Updated last week
- NEW location of IQ-TREE software for efficient phylogenomic software by maximum likelihood http://www.iqtree.org☆270Updated this week
- Mass screening of contigs for antimicrobial and virulence genes☆391Updated last year
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆582Updated last month
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆328Updated last year
- Pilon is an automated genome assembly improvement and variant detection tool☆351Updated 2 years ago
- Fast Whole-Genome Similarity (ANI) Estimation☆395Updated last year
- quality filtering tool for long reads☆322Updated last year
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆360Updated 6 months ago