sourmash-bio / sourmashLinks
Quickly search, compare, and analyze genomic and metagenomic data sets.
☆515Updated this week
Alternatives and similar repositories for sourmash
Users that are interested in sourmash are comparing it to the libraries listed below
Sorting:
- Read alignment statistics for metagenomics☆360Updated last week
- hybrid assembly pipeline for bacterial genomes☆605Updated last year
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆316Updated 5 months ago
- ATLAS - Three commands to start analyzing your metagenome data☆394Updated 3 months ago
- Fast genome and metagenome distance estimation using MinHash☆417Updated last year
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆379Updated last week
- Fast Whole-Genome Similarity (ANI) Estimation☆422Updated 2 weeks ago
- 🌈 Interactive analysis of metagenomics data☆421Updated 10 months ago
- RAxML Next Generation: faster, easier-to-use and more flexible☆429Updated last week
- Fast taxonomic classification of metagenomic sequencing reads using a protein reference database☆287Updated 3 months ago
- Mummer alignment tool☆521Updated 6 months ago
- A flexible pipeline for complete analysis of bacterial genomes☆466Updated 2 months ago
- A fast multi-threaded k-mer counter☆508Updated last year
- Sequence-to-graph mapper and graph generator☆451Updated last week
- A complete pipeline for metagenomic analysis☆422Updated 3 weeks ago
- Source for the QIIME 2 Framework (Q2F).☆510Updated last week
- Efficient pythonic random access to fasta subsequences☆478Updated 2 months ago
- A single molecule sequence assembler for genomes large and small.☆685Updated 3 weeks ago
- An updated pipeline for pangenome investigation☆307Updated 5 months ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆624Updated 2 years ago
- Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.☆381Updated last month
- Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the…☆249Updated last year
- Nanopore sequence read simulator☆276Updated 5 months ago
- Structural variation caller using third generation sequencing☆610Updated last month
- A genome visualization python package for comparative genomics☆349Updated 2 months ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆520Updated last year
- Genome assembly evaluation tool