Alternatives and similar repositories for sourmash:

Users that are interested in sourmash are comparing it to the libraries listed below

• rrwick / Unicycler
  hybrid assembly pipeline for bacterial genomes
  ☆589Updated 8 months ago
• wwood / CoverM
  Read alignment statistics for metagenomics
  ☆326Updated last week
• metagenome-atlas / atlas
  ATLAS - Three commands to start analyzing your metagenome data
  ☆383Updated 3 weeks ago
• marbl / Mash
  Fast genome and metagenome distance estimation using MinHash
  ☆401Updated last year
• gamcil / clinker
  Gene cluster comparison figure generator
  ☆563Updated 4 months ago
• fritzsedlazeck / Sniffles
  Structural variation caller using third generation sequencing
  ☆584Updated 2 weeks ago
• ncbi / pgap
  NCBI Prokaryotic Genome Annotation Pipeline
  ☆332Updated this week
• jenniferlu717 / Bracken
  Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…
  ☆305Updated last month
• stamatak / standard-RAxML
  ☆337Updated last month
• veg / hyphy
  HyPhy: Hypothesis testing using Phylogenies
  ☆230Updated last week
• chhylp123 / hifiasm
  Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
  ☆593Updated 3 weeks ago
• wdecoster / NanoPlot
  Plotting scripts for long read sequencing data
  ☆466Updated 2 months ago
• arpcard / rgi
  Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…
  ☆359Updated this week
• ablab / quast
  Genome assembly evaluation tool
  ☆426Updated 4 months ago
• rrwick / Bandage
  a Bioinformatics Application for Navigating De novo Assembly Graphs Easily
  ☆609Updated 2 years ago
• iqtree / iqtree2
  IQ-TREE software version 2: phylogenetics by maximum likelihood
  ☆277Updated 2 weeks ago
• mummer4 / mummer
  Mummer alignment tool
  ☆494Updated 2 months ago
• pyranges / pyranges
  Performant Pythonic GenomicRanges
  ☆466Updated 3 weeks ago
• marbl / canu
  A single molecule sequence assembler for genomes large and small.
  ☆673Updated last week
• malonge / RagTag
  Tools for fast and flexible genome assembly scaffolding and improvement
  ☆500Updated last year
• simonhmartin / genomics_general
  General tools for genomic analyses.
  ☆356Updated last month
• sanger-pathogens / Roary
  Rapid large-scale prokaryote pan genome analysis
  ☆341Updated 2 years ago
• jtamames / SqueezeMeta
  A complete pipeline for metagenomic analysis
  ☆400Updated this week
• broadinstitute / pilon
  Pilon is an automated genome assembly improvement and variant detection tool
  ☆357Updated 2 years ago
• mikolmogorov / Flye
  De novo assembler for single molecule sequencing reads using repeat graphs
  ☆820Updated 7 months ago
• Kinggerm / GetOrganelle
  Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)
  ☆321Updated last month
• shenwei356 / taxonkit
  A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV
  ☆408Updated 3 weeks ago
• rrwick / Trycycler
  A tool for generating consensus long-read assemblies for bacterial genomes
  ☆317Updated 10 months ago
• bactopia / bactopia
  A flexible pipeline for complete analysis of bacterial genomes
  ☆451Updated last week
• ryanlayer / samplot
  Plot structural variant signals from many BAMs and CRAMs
  ☆539Updated 8 months ago