Quickly search, compare, and analyze genomic and metagenomic data sets.
☆565Nov 10, 2026Updated this week
Alternatives and similar repositories for sourmash
Users that are interested in sourmash are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Fast genome and metagenome distance estimation using MinHash☆457Sep 19, 2025Updated last year
- Fast Whole-Genome Similarity (ANI) Estimation☆486Sep 14, 2026Updated 2 months ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆335Updated this week
- Indexing & querying large assembly graphs -- in space, no one can hear you miao!☆120Jan 29, 2026Updated 9 months ago
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆631Updated this week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆695Oct 11, 2026Updated last month
- Fast average nucleotide identity (ANI) calculator for bacterial genomes, MAGs, and contigs. Supports genome comparisons and large-scale d…☆271Oct 14, 2026Updated last month
- Read alignment statistics for metagenomics☆412Nov 4, 2026Updated last week
- ATLAS - Three commands to start analyzing your metagenome data☆405May 28, 2026Updated 5 months ago
- Fast and accurate genomic distances using HyperLogLog☆162Jan 19, 2023Updated 3 years ago
- Rapid comparison and dereplication of genomes☆361Oct 9, 2026Updated last month
- Working with the outputs of sourmash in R☆29Jan 15, 2026Updated 9 months ago
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆190Mar 17, 2026Updated 7 months ago
- Randomly subsample sequencing reads or alignments☆282Nov 2, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆221Apr 24, 2026Updated 6 months ago
- Create a tree using Mash distances☆196Oct 24, 2023Updated 3 years ago
- An analysis and visualization platform for 'omics data☆546Updated this week
- A fast approximate aligner for long DNA sequences☆292Oct 11, 2024Updated 2 years ago
- geNomad: Identification of mobile genetic elements☆344Oct 14, 2026Updated last month
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆199Updated this week
- LexicMap: efficient sequence alignment against millions of prokaryotic genomes☆227Updated this week
- Gene cluster comparison figure generator☆663Updated this week
- A flexible pipeline for complete analysis of bacterial genomes☆528Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Assessing the quality of metagenome-derived genome bins using machine learning☆284Mar 20, 2025Updated last year
- An updated pipeline for pangenome investigation☆380Nov 2, 2026Updated last week
- 🌈 Interactive analysis of metagenomics data☆456Sep 17, 2025Updated last year
- ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refse…☆109Updated this week
- A user-friendly workflow for phylogenomics☆235Updated this week
- Fast and precise comparison of genomes and metagenomes (in the order of terabytes) on a typical personal laptop☆75Apr 1, 2026Updated 7 months ago
- map Illumina metagenomes to genomes!☆38Jan 22, 2026Updated 9 months ago
- hybrid assembly pipeline for bacterial genomes☆658Jul 29, 2026Updated 3 months ago
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆358Mar 16, 2026Updated 7 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Ultra-fast and memory-efficient (meta-)genome assembler☆731Oct 28, 2025Updated last year
- Scripts to download genomes from the NCBI FTP servers☆1,093Apr 7, 2026Updated 7 months ago
- Fast genome-wide functional annotation through orthology assignment☆807Aug 13, 2026Updated 3 months ago
- MMseqs2: ultra fast and sensitive search and clustering suite☆2,169Updated this week
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆344Updated this week
- DAS Tool☆178Oct 9, 2026Updated last month
- Follow up to Grace Blackwell's 661k dataset, for 2023☆158Jun 10, 2026Updated 5 months ago
Are these results useful?