Alternatives and similar repositories for sourmash

Users that are interested in sourmash are comparing it to the libraries listed below

• gmarcais / Jellyfish
  A fast multi-threaded k-mer counter
  ☆516Updated last year
• rrwick / Unicycler
  hybrid assembly pipeline for bacterial genomes
  ☆623Updated last year
• metagenome-atlas / atlas
  ATLAS - Three commands to start analyzing your metagenome data
  ☆400Updated last month
• jenniferlu717 / Bracken
  Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…
  ☆322Updated 8 months ago
• wwood / CoverM
  Read alignment statistics for metagenomics
  ☆377Updated last week
• marbl / Mash
  Fast genome and metagenome distance estimation using MinHash
  ☆423Updated last month
• ParBLiSS / FastANI
  Fast Whole-Genome Similarity (ANI) Estimation
  ☆433Updated 3 months ago
• bioinformatics-centre / kaiju
  Fast taxonomic classification of metagenomic sequencing reads using a protein reference database
  ☆295Updated 6 months ago
• bactopia / bactopia
  A flexible pipeline for complete analysis of bacterial genomes
  ☆480Updated last week
• mummer4 / mummer
  Mummer alignment tool
  ☆532Updated 8 months ago
• mothur / mothur
  Welcome to the mothur project, initiated by Dr. Patrick Schloss and his software development team in the Department of Microbiology & Imm…
  ☆273Updated last week
• mdshw5 / pyfaidx
  Efficient pythonic random access to fasta subsequences
  ☆479Updated 2 months ago
• amkozlov / raxml-ng
  RAxML Next Generation: faster, easier-to-use and more flexible
  ☆440Updated last week
• arpcard / rgi
  Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…
  ☆392Updated last month
• qiime2 / qiime2
  Source for the QIIME 2 Framework (Q2F).
  ☆516Updated last week
• bcgsc / NanoSim
  Nanopore sequence read simulator
  ☆284Updated 8 months ago
• fbreitwieser / pavian
  🌈 Interactive analysis of metagenomics data
  ☆427Updated last month
• bioconvert / bioconvert
  Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.
  ☆384Updated 4 months ago
• ncbi / amr
  AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and p…
  ☆329Updated last month
• fritzsedlazeck / Sniffles
  Structural variation caller using third generation sequencing
  ☆624Updated last week
• marbl / canu
  A single molecule sequence assembler for genomes large and small.
  ☆693Updated last month
• Ecogenomics / GTDBTk
  GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
  ☆550Updated this week
• malonge / RagTag
  Tools for fast and flexible genome assembly scaffolding and improvement
  ☆536Updated last year
• oschwengers / bakta
  Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
  ☆563Updated 2 weeks ago
• nextgenusfs / funannotate
  Eukaryotic Genome Annotation Pipeline
  ☆366Updated 3 months ago
• rrwick / Bandage
  a Bioinformatics Application for Navigating De novo Assembly Graphs Easily
  ☆646Updated 2 years ago
• jtamames / SqueezeMeta
  A complete pipeline for metagenomic analysis
  ☆435Updated this week
• Gaius-Augustus / Augustus
  Genome annotation with AUGUSTUS
  ☆320Updated 2 months ago
• agshumate / Liftoff
  An accurate GFF3/GTF lift over pipeline
  ☆511Updated 2 years ago
• gtonkinhill / panaroo
  An updated pipeline for pangenome investigation
  ☆317Updated 8 months ago