Alternatives and similar repositories for idba

Users that are interested in idba are comparing it to the libraries listed below

• tseemann / nullarbor
  "Reads to report" for public health and clinical microbiology
  ☆142Updated last month
• ncbi / fcs
  Foreign Contamination Screening caller scripts and documentation
  ☆155Updated 10 months ago
• DRL / blobtools
  Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets
  ☆208Updated last year
• CSB5 / OPERA-MS
  OPERA-MS - Hybrid Metagenomic Assembler
  ☆99Updated last year
• rrwick / Long-read-assembler-comparison
  Benchmarking of long-read assembly tools for bacterial whole genomes
  ☆172Updated 4 years ago
• LomanLab / mockcommunity
  Long-read mock community experiments
  ☆104Updated 4 years ago
• xiaochuanle / NECAT
  Nanopore data assembler
  ☆163Updated 3 years ago
• BinPro / CONCOCT
  Clustering cONtigs with COverage and ComposiTion
  ☆135Updated 5 years ago
• andersen-lab / ivar
  iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.
  ☆132Updated this week
• mahulchak / quickmerge
  A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.
  ☆207Updated 3 years ago
• medvedevgroup / SibeliaZ
  A fast whole-genome aligner based on de Bruijn graphs
  ☆156Updated 6 months ago
• artic-network / fieldbioinformatics
  The ARTIC fieldbioinformatics pipeline
  ☆128Updated 2 weeks ago
• ncbi / SKESA
  SKESA assembler
  ☆124Updated last year
• chrishah / MITObim
  MITObim - mitochondrial baiting and iterative mapping
  ☆113Updated 5 years ago
• tseemann / any2fasta
  Convert various sequence formats to FASTA
  ☆145Updated 3 weeks ago
• malonge / RaGOO
  RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag
  ☆174Updated 4 years ago
• sanger-pathogens / assembly-stats
  Get assembly statistics from FASTA and FASTQ files
  ☆124Updated 2 years ago
• sanger-pathogens / circlator
  A tool to circularize genome assemblies
  ☆250Updated last year
• ruanjue / smartdenovo
  Ultra-fast de novo assembler using long noisy reads
  ☆136Updated 4 years ago
• aineniamh / snipit
  snipit: summarise snps relative to your reference sequence
  ☆166Updated last week
• nigyta / dfast_core
  DDBJ Fast Annotation and Submission Tool
  ☆83Updated 4 months ago
• linzhi2013 / MitoZ
  MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes
  ☆134Updated last year
• marbl / parsnp
  Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…
  ☆148Updated 3 months ago
• wdecoster / chopper
  ☆227Updated last month
• CompSynBioLab-KoreaUniv / FunGAP
  FunGAP: fungal Genome Annotation Pipeline
  ☆111Updated 7 months ago
• qiyunlab / HGTector
  HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.
  ☆143Updated 2 years ago
• neherlab / pan-genome-analysis
  Processing pipeline for pan-genome visulization and exploration
  ☆143Updated 2 years ago
• katholt / srst2
  Short Read Sequence Typing for Bacterial Pathogens
  ☆145Updated 4 years ago
• nanoporetech / ont-assembly-polish
  ONT assembly and Illumina polishing pipeline
  ☆89Updated 5 years ago
• cmks / DAS_Tool
  DAS Tool
  ☆166Updated last year