loneknightpy / idbaLinks
☆131Updated 2 years ago
Alternatives and similar repositories for idba
Users that are interested in idba are comparing it to the libraries listed below
Sorting:
- Benchmarking of long-read assembly tools for bacterial whole genomes☆172Updated 4 years ago
- "Reads to report" for public health and clinical microbiology☆140Updated last year
- BSR-Based Allele Calling Algorithm☆148Updated 2 weeks ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆204Updated last year
- OPERA-MS - Hybrid Metagenomic Assembler☆99Updated last year
- Convert various sequence formats to FASTA☆138Updated 3 years ago
- Foreign Contamination Screening caller scripts and documentation☆138Updated 6 months ago
- Clustering cONtigs with COverage and ComposiTion☆133Updated 5 years ago
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆128Updated 10 months ago
- Long-read mock community experiments☆105Updated 3 years ago
- Get assembly statistics from FASTA and FASTQ files☆123Updated 2 years ago
- A fast whole-genome aligner based on de Bruijn graphs☆152Updated 2 months ago
- A tool to circularize genome assemblies☆247Updated last year
- Ultra-fast de novo assembler using long noisy reads☆134Updated 4 years ago
- snipit: summarise snps relative to your reference sequence☆163Updated 4 months ago
- Processing pipeline for pan-genome visulization and exploration☆140Updated last year
- MITObim - mitochondrial baiting and iterative mapping☆114Updated 4 years ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆172Updated 4 years ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆206Updated 2 years ago
- ONT assembly and Illumina polishing pipeline☆89Updated 4 years ago
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆119Updated this week
- ☆216Updated 7 months ago
- DDBJ Fast Annotation and Submission Tool☆82Updated last week
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆220Updated 2 months ago
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆145Updated 4 months ago
- Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins☆200Updated 3 weeks ago
- Nanopore data assembler☆161Updated 3 years ago
- iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.☆126Updated this week
- Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.☆117Updated 4 years ago
- Generate an interactive dot plot from mummer or minimap alignments☆209Updated last year