loneknightpy / idbaLinks
☆128Updated last year
Alternatives and similar repositories for idba
Users that are interested in idba are comparing it to the libraries listed below
Sorting:
- "Reads to report" for public health and clinical microbiology☆139Updated last year
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆115Updated 3 months ago
- A fast whole-genome aligner based on de Bruijn graphs☆150Updated 3 months ago
- Foreign Contamination Screening caller scripts and documentation☆129Updated 2 months ago
- Python programs for processing GFF3 files☆98Updated last year
- Long-read mock community experiments☆105Updated 3 years ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆202Updated 9 months ago
- Nanopore data assembler☆156Updated 3 years ago
- Generate an interactive dot plot from mummer or minimap alignments☆202Updated last year
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆204Updated 2 years ago
- ONT assembly and Illumina polishing pipeline☆89Updated 4 years ago
- Benchmarking of long-read assembly tools for bacterial whole genomes☆171Updated 4 years ago
- MITObim - mitochondrial baiting and iterative mapping☆112Updated 4 years ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆173Updated 4 years ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆127Updated 3 weeks ago
- Fast and accurately polish the genome generated by long reads.☆225Updated 4 months ago
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆124Updated 7 months ago
- FunGAP: fungal Genome Annotation Pipeline☆111Updated last year
- ☆209Updated 4 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆137Updated this week
- BSR-Based Allele Calling Algorithm☆145Updated last month
- OPERA-MS - Hybrid Metagenomic Assembler☆95Updated 11 months ago
- Convert various sequence formats to FASTA☆136Updated 2 years ago
- Processing pipeline for pan-genome visulization and exploration☆139Updated last year
- Find, circularise and annotate mitogenome from PacBio assemblies☆182Updated 3 weeks ago
- Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.☆116Updated 4 years ago
- Pan-genome wide association studies☆198Updated last year
- Clustering cONtigs with COverage and ComposiTion☆130Updated 5 years ago
- Get assembly statistics from FASTA and FASTQ files☆120Updated 2 years ago
- Assembly statistic visualisation☆90Updated last year