shenwei356 / seqkit
A cross-platform and ultrafast toolkit for FASTA/Q file manipulation
☆1,322Updated 2 weeks ago
Related projects ⓘ
Alternatives and complementary repositories for seqkit
- Toolkit for processing sequences in FASTA/Q formats☆1,395Updated 3 months ago
- Fast genome-wide functional annotation through orthology assignment☆572Updated 6 months ago
- A list of interesting genome browser or genome-browser-like implementations☆862Updated this week
- Phylogenetic orthology inference for comparative genomics☆708Updated 3 weeks ago
- Gene cluster comparison figure generator☆532Updated last month
- Bioinformatics code libraries and scripts☆503Updated last month
- De novo assembler for single molecule sequencing reads using repeat graphs☆789Updated 2 months ago
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,229Updated this week
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆1,932Updated last week
- Rapid prokaryotic genome annotation☆846Updated 7 months ago
- Trinity RNA-Seq de novo transcriptome assembly☆837Updated 3 months ago
- A single molecule sequence assembler for genomes large and small.☆660Updated this week
- Python library to facilitate genome assembly, annotation, and comparative genomics☆760Updated last week
- Near-optimal RNA-Seq quantification☆657Updated last week
- bedtools - the swiss army knife for genome arithmetic☆939Updated 4 months ago
- Scripts to download genomes from the NCBI FTP servers☆956Updated 3 months ago
- The next version of bwa-mem☆722Updated 3 months ago
- hybrid assembly pipeline for bacterial genomes☆567Updated 3 months ago
- The second version of the Kraken taxonomic sequence classification system☆731Updated this week
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆1,813Updated this week
- A fast and sensitive gapped read aligner☆683Updated this week
- Efficient pythonic random access to fasta subsequences☆460Updated last month
- SPAdes Genome Assembler☆762Updated 2 weeks ago
- A quality control analysis tool for high throughput sequencing data☆450Updated 10 months ago
- Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing☆410Updated this week
- Accelerated BLAST compatible local sequence aligner.☆1,067Updated last week
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆587Updated last year
- Tools (written in C using htslib) for manipulating next-generation sequencing data☆1,631Updated this week
- python module to plot beautiful and highly customizable genome browser tracks☆775Updated 4 months ago
- Tools to process and analyze deep sequencing data.☆684Updated last month