shenwei356 / seqkitLinks
A cross-platform and ultrafast toolkit for FASTA/Q file manipulation
☆1,461Updated 2 weeks ago
Alternatives and similar repositories for seqkit
Users that are interested in seqkit are comparing it to the libraries listed below
Sorting:
- Toolkit for processing sequences in FASTA/Q formats☆1,491Updated 3 months ago
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,353Updated last week
- Scripts to download genomes from the NCBI FTP servers☆1,030Updated last month
- Trinity RNA-Seq de novo transcriptome assembly☆869Updated 7 months ago
- Phylogenetic orthology inference for comparative genomics☆794Updated 2 months ago
- Rapid prokaryotic genome annotation☆932Updated last year
- Fast genome-wide functional annotation through orthology assignment☆649Updated 2 months ago
- SPAdes Genome Assembler☆866Updated 2 weeks ago
- Python library to facilitate genome assembly, annotation, and comparative genomics☆851Updated 3 weeks ago
- A fast and sensitive gapped read aligner☆743Updated last week
- Bioinformatics code libraries and scripts☆542Updated last month
- RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.☆1,101Updated this week
- A list of interesting genome browser and genome visualization programs☆1,005Updated last week
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,171Updated this week
- The second version of the Kraken taxonomic sequence classification system☆823Updated last week
- bedtools - the swiss army knife for genome arithmetic☆999Updated 6 months ago
- The next version of bwa-mem☆779Updated 2 months ago
- De novo assembler for single molecule sequencing reads using repeat graphs☆868Updated 4 months ago
- Versatile open-source tool for microbiome analysis☆718Updated last week
- A quality control analysis tool for high throughput sequencing data☆530Updated last month
- Bioinformatics containers☆745Updated 3 weeks ago
- Accelerated BLAST compatible local sequence aligner.☆1,179Updated this week
- SRA Tools☆1,254Updated this week
- Graph-based alignment (Hierarchical Graph FM index)☆510Updated last week
- python module to plot beautiful and highly customizable genome browser tracks☆838Updated last year
- Tools to process and analyze deep sequencing data.☆733Updated last month
- A single molecule sequence assembler for genomes large and small.☆689Updated last week
- hybrid assembly pipeline for bacterial genomes☆612Updated last year
- A list of useful bioinformatics resources☆616Updated 4 months ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆633Updated 2 years ago