shenwei356 / seqkit
A cross-platform and ultrafast toolkit for FASTA/Q file manipulation
☆1,373Updated 3 weeks ago
Alternatives and similar repositories for seqkit:
Users that are interested in seqkit are comparing it to the libraries listed below
- Phylogenetic orthology inference for comparative genomics☆742Updated 4 months ago
- Toolkit for processing sequences in FASTA/Q formats☆1,436Updated 7 months ago
- Fast genome-wide functional annotation through orthology assignment☆596Updated 9 months ago
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,271Updated this week
- De novo assembler for single molecule sequencing reads using repeat graphs☆813Updated 6 months ago
- Bioinformatics containers☆709Updated last month
- Python library to facilitate genome assembly, annotation, and comparative genomics☆801Updated 3 weeks ago
- Gene cluster comparison figure generator☆555Updated 3 months ago
- Scripts to download genomes from the NCBI FTP servers☆987Updated 7 months ago
- bedtools - the swiss army knife for genome arithmetic☆964Updated this week
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,023Updated 3 months ago
- Rapid prokaryotic genome annotation☆877Updated 11 months ago
- Bioinformatics code libraries and scripts☆518Updated last month
- A fast and sensitive gapped read aligner☆697Updated 3 months ago
- The second version of the Kraken taxonomic sequence classification system☆764Updated this week
- Trinity RNA-Seq de novo transcriptome assembly☆852Updated last month
- A single molecule sequence assembler for genomes large and small.☆671Updated 2 weeks ago
- python module to plot beautiful and highly customizable genome browser tracks☆797Updated 8 months ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆607Updated 2 years ago
- RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.☆990Updated this week
- A quality control analysis tool for high throughput sequencing data☆485Updated last year
- The next version of bwa-mem☆741Updated 7 months ago
- Accelerated BLAST compatible local sequence aligner.☆1,114Updated last month
- Tools to process and analyze deep sequencing data.☆703Updated this week
- A list of interesting genome browser and genome visualization programs☆916Updated last week
- A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…☆488Updated this week
- hybrid assembly pipeline for bacterial genomes☆584Updated 7 months ago
- A complete pipeline for metagenomic analysis☆399Updated last week
- Automatically exported from code.google.com/p/cdhit☆655Updated 2 years ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆1,894Updated 3 months ago