🌈 Interactive analysis of metagenomics data
☆445Sep 17, 2025Updated 6 months ago
Alternatives and similar repositories for pavian
Users that are interested in pavian are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Classifier for metagenomic sequences☆271Jun 20, 2025Updated 9 months ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆371Aug 1, 2025Updated 7 months ago
- 🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results☆244Jan 18, 2024Updated 2 years ago
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆339Mar 16, 2026Updated last week
- The second version of the Kraken taxonomic sequence classification system☆886Updated this week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Recentrifuge: robust comparative analysis and contamination removal for metagenomics☆101Feb 10, 2026Updated last month
- Long-read metagenomic analysis☆110Oct 10, 2023Updated 2 years ago
- Read alignment statistics for metagenomics☆395Mar 16, 2026Updated last week
- A robust, extensible metagenomics pipeline☆175Mar 23, 2026Updated last week
- Interactively explore metagenomes and more from a web browser.☆496Dec 22, 2021Updated 4 years ago
- ☆84Sep 13, 2023Updated 2 years ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆404Mar 2, 2026Updated 3 weeks ago
- Kraken taxonomic sequence classification system☆223Sep 27, 2021Updated 4 years ago
- hybrid assembly pipeline for bacterial genomes☆635Jul 25, 2024Updated last year
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and p…☆357Mar 4, 2026Updated 3 weeks ago
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆170Sep 4, 2025Updated 6 months ago
- Fast taxonomic classification of metagenomic sequencing reads using a protein reference database☆301Apr 25, 2025Updated 11 months ago
- Antimicrobial Resistance Identification By Assembly☆186Oct 12, 2023Updated 2 years ago
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆587Feb 21, 2026Updated last month
- Mass screening of contigs for antimicrobial and virulence genes☆484Jan 31, 2026Updated last month
- A complete pipeline for metagenomic analysis☆440Mar 11, 2026Updated 2 weeks ago
- Ultra-fast and memory-efficient (meta-)genome assembler☆699Oct 28, 2025Updated 5 months ago
- Quickly search, compare, and analyze genomic and metagenomic data sets.☆542Updated this week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆404Updated this week
- ATLAS - Three commands to start analyzing your metagenome data☆403Nov 28, 2025Updated 4 months ago
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆467Jul 28, 2023Updated 2 years ago
- Rapid comparison and dereplication of genomes☆330Nov 10, 2025Updated 4 months ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆298Feb 3, 2026Updated last month
- CAMISIM: Simulating metagenomes and microbial communities☆222Updated this week
- Gene cluster comparison figure generator☆638Dec 22, 2025Updated 3 months ago
- A tool to circularize genome assemblies☆253Apr 6, 2024Updated last year
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆396Mar 16, 2026Updated last week
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics☆203Aug 25, 2025Updated 7 months ago
- Variational autoencoder for metagenomic binning☆319Feb 23, 2026Updated last month
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆668Dec 3, 2022Updated 3 years ago
- Pilon is an automated genome assembly improvement and variant detection tool☆380Apr 10, 2022Updated 3 years ago
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆208Sep 22, 2023Updated 2 years ago
- Bioinformatics program inStrain☆182Mar 12, 2026Updated 2 weeks ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆325Mar 18, 2026Updated last week