🌈 Interactive analysis of metagenomics data
☆442Sep 17, 2025Updated 5 months ago
Alternatives and similar repositories for pavian
Users that are interested in pavian are comparing it to the libraries listed below
Sorting:
- Classifier for metagenomic sequences☆271Jun 20, 2025Updated 8 months ago
- 🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results☆244Jan 18, 2024Updated 2 years ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆367Aug 1, 2025Updated 7 months ago
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆340Feb 26, 2025Updated last year
- The second version of the Kraken taxonomic sequence classification system☆875Feb 19, 2026Updated 2 weeks ago
- ☆84Sep 13, 2023Updated 2 years ago
- Recentrifuge: robust comparative analysis and contamination removal for metagenomics☆100Feb 10, 2026Updated 3 weeks ago
- Read alignment statistics for metagenomics☆390Jan 16, 2026Updated last month
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆403Updated this week
- Interactively explore metagenomes and more from a web browser.☆493Dec 22, 2021Updated 4 years ago
- Long-read metagenomic analysis☆110Oct 10, 2023Updated 2 years ago
- hybrid assembly pipeline for bacterial genomes☆634Jul 25, 2024Updated last year
- Fast taxonomic classification of metagenomic sequencing reads using a protein reference database☆301Apr 25, 2025Updated 10 months ago
- A complete pipeline for metagenomic analysis☆440Mar 1, 2026Updated last week
- AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and p…☆353Feb 27, 2026Updated last week
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆582Feb 21, 2026Updated 2 weeks ago
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆169Sep 4, 2025Updated 6 months ago
- A robust, extensible metagenomics pipeline☆175Mar 2, 2026Updated last week
- Antimicrobial Resistance Identification By Assembly☆185Oct 12, 2023Updated 2 years ago
- Mass screening of contigs for antimicrobial and virulence genes☆481Jan 31, 2026Updated last month
- Kraken taxonomic sequence classification system☆221Sep 27, 2021Updated 4 years ago
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆402Updated this week
- Ultra-fast and memory-efficient (meta-)genome assembler☆696Oct 28, 2025Updated 4 months ago
- Quickly search, compare, and analyze genomic and metagenomic data sets.☆540Updated this week
- Rapid comparison and dereplication of genomes☆328Nov 10, 2025Updated 3 months ago
- ATLAS - Three commands to start analyzing your metagenome data☆402Nov 28, 2025Updated 3 months ago
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆460Jul 28, 2023Updated 2 years ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆297Feb 3, 2026Updated last month
- A tool to circularize genome assemblies☆253Apr 6, 2024Updated last year
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆666Dec 3, 2022Updated 3 years ago
- CAMISIM: Simulating metagenomes and microbial communities☆223Feb 18, 2026Updated 2 weeks ago
- Gene cluster comparison figure generator☆637Dec 22, 2025Updated 2 months ago
- Rapid haploid variant calling and core genome alignment☆569Dec 12, 2025Updated 2 months ago
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆394Dec 13, 2025Updated 2 months ago
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆255Dec 13, 2025Updated 2 months ago
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆207Sep 22, 2023Updated 2 years ago
- Bioinformatics program inStrain☆181May 9, 2025Updated 9 months ago
- Fast genome and metagenome distance estimation using MinHash☆435Sep 19, 2025Updated 5 months ago
- Rapid prokaryotic genome annotation☆960Jan 6, 2026Updated 2 months ago