MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis
☆472Jul 28, 2023Updated 2 years ago
Alternatives and similar repositories for metaWRAP
Users that are interested in metaWRAP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆606May 20, 2026Updated 3 weeks ago
- Rapid comparison and dereplication of genomes☆345Nov 10, 2025Updated 7 months ago
- DAS Tool☆173May 2, 2024Updated 2 years ago
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆409May 22, 2026Updated 2 weeks ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆409Mar 2, 2026Updated 3 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- SemiBin: metagenomics binning with self-supervised deep learning☆164Updated this week
- Assessing the quality of metagenome-derived genome bins using machine learning☆267Mar 20, 2025Updated last year
- Variational autoencoder for metagenomic binning☆328Apr 27, 2026Updated last month
- Ultra-fast and memory-efficient (meta-)genome assembler☆719Oct 28, 2025Updated 7 months ago
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆230Apr 1, 2026Updated 2 months ago
- A complete pipeline for metagenomic analysis☆446Updated this week
- Read alignment statistics for metagenomics☆399Apr 8, 2026Updated 2 months ago
- The second version of the Kraken taxonomic sequence classification system☆909Updated this week
- Clustering cONtigs with COverage and ComposiTion☆138Mar 6, 2020Updated 6 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- customizable pipeline to identify viral sequences from (meta)genomic data☆291Nov 28, 2024Updated last year
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆227Mar 24, 2026Updated 2 months ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆334Jun 3, 2026Updated last week
- A toolbox for improving metagenome-assembled genomes.☆64Jun 2, 2021Updated 5 years ago
- Fast genome-wide functional annotation through orthology assignment☆739May 22, 2026Updated 2 weeks ago
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆167Feb 13, 2026Updated 3 months ago
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆166Apr 23, 2025Updated last year
- Prodigal Gene Prediction Software☆542Jan 23, 2024Updated 2 years ago
- ☆64Feb 27, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Code, unit tests, and tutorials for running PICRUSt2☆389Nov 27, 2025Updated 6 months ago
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆421May 20, 2026Updated 3 weeks ago
- geNomad: Identification of mobile genetic elements☆316Mar 29, 2026Updated 2 months ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆375Aug 1, 2025Updated 10 months ago
- Fast Whole-Genome Similarity (ANI) Estimation☆463Dec 16, 2025Updated 5 months ago
- Rapid prokaryotic genome annotation☆985Jan 6, 2026Updated 5 months ago
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆353Mar 16, 2026Updated 2 months ago
- ATLAS - Three commands to start analyzing your metagenome data☆405May 28, 2026Updated 2 weeks ago
- Bioinformatics program inStrain☆188Mar 12, 2026Updated 2 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- SPAdes Genome Assembler☆939Jun 3, 2026Updated last week
- Toolbox for comparative genomics of MAGs☆91Apr 28, 2026Updated last month
- An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…☆264May 13, 2026Updated 3 weeks ago
- Scripts to download genomes from the NCBI FTP servers☆1,079Apr 7, 2026Updated 2 months ago
- Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.☆150Dec 17, 2025Updated 5 months ago
- Nature Communications | BASALT (Binning Across a Series of Assemblies Toolkit) for binning and refinement of short- and long-read sequenc…☆128May 28, 2026Updated 2 weeks ago
- hybrid assembly pipeline for bacterial genomes☆643Jul 25, 2024Updated last year