MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis
☆466Jul 28, 2023Updated 2 years ago
Alternatives and similar repositories for metaWRAP
Users that are interested in metaWRAP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆587Feb 21, 2026Updated last month
- Rapid comparison and dereplication of genomes☆333Nov 10, 2025Updated 5 months ago
- DAS Tool☆171May 2, 2024Updated last year
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆406Mar 2, 2026Updated last month
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆398Mar 16, 2026Updated 3 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- SemiBin: metagenomics binning with self-supervised deep learning☆158Feb 19, 2026Updated last month
- Assessing the quality of metagenome-derived genome bins using machine learning☆252Mar 20, 2025Updated last year
- Ultra-fast and memory-efficient (meta-)genome assembler☆702Oct 28, 2025Updated 5 months ago
- Variational autoencoder for metagenomic binning☆319Feb 23, 2026Updated last month
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆228Apr 1, 2026Updated last week
- A complete pipeline for metagenomic analysis☆439Mar 11, 2026Updated last month
- Read alignment statistics for metagenomics☆395Mar 16, 2026Updated 3 weeks ago
- The second version of the Kraken taxonomic sequence classification system☆889Apr 1, 2026Updated last week
- customizable pipeline to identify viral sequences from (meta)genomic data☆285Nov 28, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Clustering cONtigs with COverage and ComposiTion☆137Mar 6, 2020Updated 6 years ago
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆220Mar 24, 2026Updated 2 weeks ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆328Mar 30, 2026Updated last week
- A toolbox for improving metagenome-assembled genomes.☆64Jun 2, 2021Updated 4 years ago
- Fast genome-wide functional annotation through orthology assignment☆716Mar 24, 2026Updated 2 weeks ago
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆163Feb 13, 2026Updated last month
- Prodigal Gene Prediction Software☆531Jan 23, 2024Updated 2 years ago
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆161Apr 23, 2025Updated 11 months ago
- Code, unit tests, and tutorials for running PICRUSt2☆385Nov 27, 2025Updated 4 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- ☆63Feb 27, 2024Updated 2 years ago
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆408Mar 26, 2026Updated 2 weeks ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆371Aug 1, 2025Updated 8 months ago
- Fast Whole-Genome Similarity (ANI) Estimation☆452Dec 16, 2025Updated 3 months ago
- Rapid prokaryotic genome annotation☆971Jan 6, 2026Updated 3 months ago
- geNomad: Identification of mobile genetic elements☆297Mar 29, 2026Updated last week
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆341Mar 16, 2026Updated 3 weeks ago
- ATLAS - Three commands to start analyzing your metagenome data☆404Nov 28, 2025Updated 4 months ago
- Bioinformatics program inStrain☆184Mar 12, 2026Updated 3 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- SPAdes Genome Assembler☆925Mar 17, 2026Updated 3 weeks ago
- An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…☆257Jul 27, 2024Updated last year
- Toolbox for comparative genomics of MAGs☆88Mar 25, 2026Updated 2 weeks ago
- Scripts to download genomes from the NCBI FTP servers☆1,070Updated this week
- Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.☆145Dec 17, 2025Updated 3 months ago
- Nature Communications | BASALT (Binning Across a Series of Assemblies Toolkit) for binning and refinement of short- and long-read sequenc…☆128Feb 8, 2026Updated 2 months ago
- hybrid assembly pipeline for bacterial genomes☆635Jul 25, 2024Updated last year