BinPro / CONCOCTLinks
Clustering cONtigs with COverage and ComposiTion
☆130Updated 5 years ago
Alternatives and similar repositories for CONCOCT
Users that are interested in CONCOCT are comparing it to the libraries listed below
Sorting:
- Long-read mock community experiments☆105Updated 3 years ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆121Updated last year
- OPERA-MS - Hybrid Metagenomic Assembler☆95Updated 11 months ago
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆115Updated 3 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆137Updated this week
- DDBJ Fast Annotation and Submission Tool☆79Updated last month
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆127Updated 3 weeks ago
- Metatranscriptomics Tutorial☆62Updated last year
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆95Updated last month
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆76Updated 3 months ago
- ☆82Updated last year
- Assessing the quality of metagenome-derived genome bins using machine learning☆211Updated 2 months ago
- ONT assembly and Illumina polishing pipeline☆89Updated 4 years ago
- Development version of Easyfig☆97Updated last year
- A toolbox for comparative genomics.☆103Updated 4 years ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆230Updated 2 months ago
- Foreign Contamination Screening caller scripts and documentation☆129Updated 2 months ago
- ☆135Updated 11 months ago
- fast phage annotation program☆163Updated 2 weeks ago
- FunGAP: fungal Genome Annotation Pipeline☆111Updated last year
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆148Updated last month
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆57Updated last year
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆69Updated 11 months ago
- ☆128Updated last year
- "Reads to report" for public health and clinical microbiology☆139Updated last year
- Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biot…☆68Updated 4 years ago
- Convert GTDB taxonomy to NCBI taxdump format☆71Updated last year
- Processing pipeline for pan-genome visulization and exploration☆139Updated last year
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆47Updated 4 years ago
- a signal-level demultiplexer for Oxford Nanopore reads☆126Updated 4 years ago