Clustering cONtigs with COverage and ComposiTion
☆138Mar 6, 2020Updated 6 years ago
Alternatives and similar repositories for CONCOCT
Users that are interested in CONCOCT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆409Mar 2, 2026Updated 3 months ago
- Repository of our application for human-augmented binning☆27Apr 26, 2021Updated 5 years ago
- DAS Tool☆173May 2, 2024Updated 2 years ago
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆472Jul 28, 2023Updated 2 years ago
- Improving genome bins through the combination of different binning programs☆31Jan 30, 2023Updated 3 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- A toolbox for improving metagenome-assembled genomes.☆64Jun 2, 2021Updated 5 years ago
- Metagenomic binning suite☆29Sep 30, 2022Updated 3 years ago
- Ultra-fast and memory-efficient (meta-)genome assembler☆719Oct 28, 2025Updated 7 months ago
- A genome binning method for contig binning, based on semi-supervised spectral clustering method.☆12Nov 21, 2020Updated 5 years ago
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆606May 20, 2026Updated 3 weeks ago
- SemiBin: metagenomics binning with self-supervised deep learning☆164Updated this week
- Phylogenetic and taxonomic analysis for genomes and metagenomes☆82Feb 17, 2016Updated 10 years ago
- Variational autoencoder for metagenomic binning☆328Apr 27, 2026Updated last month
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆227Mar 24, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Rapid comparison and dereplication of genomes☆345Nov 10, 2025Updated 7 months ago
- abawaca is a binning program for metagenomics☆13May 20, 2017Updated 9 years ago
- AMBER: Assessment of Metagenome BinnERs☆33Apr 14, 2026Updated last month
- Prodigal Gene Prediction Software☆542Jan 23, 2024Updated 2 years ago
- Microbial RNA annotation☆296Apr 12, 2026Updated last month
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆230Apr 1, 2026Updated 2 months ago
- Fast genome-wide functional annotation through orthology assignment☆739May 22, 2026Updated 2 weeks ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Aug 18, 2017Updated 8 years ago
- Pipeline to annotate sequences at different taxonomic levels using NCBI's taxonomy☆19Jul 19, 2013Updated 12 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Mapping-Assisted Targeted-Assembly for Metagenomics☆27Mar 28, 2025Updated last year
- OPERA-MS - Hybrid Metagenomic Assembler☆102Jul 3, 2024Updated last year
- Fast taxonomic classification of metagenomic sequencing reads using a protein reference database☆302Updated this week
- Windowed Adaptive Trimming for fastq files using quality☆228May 8, 2017Updated 9 years ago
- Virus Identification By iteRative ANnoTation☆196Apr 15, 2024Updated 2 years ago
- A simple script to display stuff on a world map with R and ggplot☆18Feb 17, 2026Updated 3 months ago
- MetaPathways v2.0: A master-worker model for environmental Pathway/Genome Database construction on grids and clouds☆33Nov 26, 2015Updated 10 years ago
- Rapid prokaryotic genome annotation☆985Jan 6, 2026Updated 5 months ago
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆167Feb 13, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- SPAdes Genome Assembler☆939Jun 3, 2026Updated last week
- Python package for detection of chimerism and contamination in prokaryotic genomes.☆90May 11, 2026Updated 3 weeks ago
- Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation☆31May 25, 2021Updated 5 years ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆334Jun 3, 2026Updated last week
- Read alignment statistics for metagenomics☆399Apr 8, 2026Updated 2 months ago
- ☆64Feb 27, 2024Updated 2 years ago
- MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics☆207Aug 25, 2025Updated 9 months ago