BinPro / CONCOCTLinks
Clustering cONtigs with COverage and ComposiTion
☆135Updated 5 years ago
Alternatives and similar repositories for CONCOCT
Users that are interested in CONCOCT are comparing it to the libraries listed below
Sorting:
- OPERA-MS - Hybrid Metagenomic Assembler☆99Updated last year
- DDBJ Fast Annotation and Submission Tool☆83Updated 3 months ago
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆148Updated 3 months ago
- Processing pipeline for pan-genome visulization and exploration☆142Updated 2 years ago
- Long-read mock community experiments☆104Updated 4 years ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆146Updated 2 weeks ago
- Development version of Easyfig☆102Updated 2 years ago
- Software for prediction of plasmid sequences in metagenomic assemblies☆107Updated 4 years ago
- HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.☆142Updated 2 years ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆123Updated 2 years ago
- Metatranscriptomics Tutorial☆66Updated 2 years ago
- FunGAP: fungal Genome Annotation Pipeline☆111Updated 7 months ago
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆122Updated 2 weeks ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆80Updated 2 years ago
- DAS Tool☆163Updated last year
- A toolbox for comparative genomics.☆108Updated 4 years ago
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆100Updated last month
- snipit: summarise snps relative to your reference sequence☆164Updated 3 months ago
- ☆131Updated 2 years ago
- Foreign Contamination Screening caller scripts and documentation☆155Updated 9 months ago
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆75Updated last year
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆61Updated last year
- An integrated pipeline for estimating strain-level genomic variation from metagenomic data☆132Updated 2 years ago
- Benchmarking of long-read assembly tools for bacterial whole genomes☆172Updated 4 years ago
- A tool for the identification of coincident (associating and dissociating) genes in pangenomes.☆109Updated 2 years ago
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆145Updated 3 weeks ago
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆57Updated 3 years ago
- Horizontal gene transfer (HGT) identification pipeline☆65Updated 2 years ago
- ☆84Updated 2 years ago
- Supporting code for uncultivated gut virus manuscript☆77Updated 2 years ago