Clustering cONtigs with COverage and ComposiTion
☆137Mar 6, 2020Updated 6 years ago
Alternatives and similar repositories for CONCOCT
Users that are interested in CONCOCT are comparing it to the libraries listed below
Sorting:
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆404Mar 2, 2026Updated 2 weeks ago
- Repository of our application for human-augmented binning☆27Apr 26, 2021Updated 4 years ago
- DAS Tool☆169May 2, 2024Updated last year
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆467Jul 28, 2023Updated 2 years ago
- Improving genome bins through the combination of different binning programs☆31Jan 30, 2023Updated 3 years ago
- A toolbox for improving metagenome-assembled genomes.☆64Jun 2, 2021Updated 4 years ago
- Metagenomic binning suite☆29Sep 30, 2022Updated 3 years ago
- Ultra-fast and memory-efficient (meta-)genome assembler☆698Oct 28, 2025Updated 4 months ago
- A genome binning method for contig binning, based on semi-supervised spectral clustering method.☆12Nov 21, 2020Updated 5 years ago
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆585Feb 21, 2026Updated last month
- Phylogenetic and taxonomic analysis for genomes and metagenomes☆82Feb 17, 2016Updated 10 years ago
- Variational autoencoder for metagenomic binning☆319Feb 23, 2026Updated 3 weeks ago
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆219Jan 27, 2025Updated last year
- Rapid comparison and dereplication of genomes☆329Nov 10, 2025Updated 4 months ago
- abawaca is a binning program for metagenomics☆13May 20, 2017Updated 8 years ago
- SemiBin: metagenomics binning with self-supervised deep learning☆156Feb 19, 2026Updated last month
- AMBER: Assessment of Metagenome BinnERs☆33Mar 10, 2026Updated last week
- Prodigal Gene Prediction Software☆529Jan 23, 2024Updated 2 years ago
- Bacterial ribosomal RNA predictor☆283Jan 10, 2026Updated 2 months ago
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆227Jan 20, 2026Updated 2 months ago
- Fast genome-wide functional annotation through orthology assignment☆708Jun 18, 2025Updated 9 months ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Aug 18, 2017Updated 8 years ago
- OPERA-MS - Hybrid Metagenomic Assembler☆99Jul 3, 2024Updated last year
- Pipeline to annotate sequences at different taxonomic levels using NCBI's taxonomy☆19Jul 19, 2013Updated 12 years ago
- Mapping-Assisted Targeted-Assembly for Metagenomics☆26Mar 28, 2025Updated 11 months ago
- Fast taxonomic classification of metagenomic sequencing reads using a protein reference database☆301Apr 25, 2025Updated 10 months ago
- Windowed Adaptive Trimming for fastq files using quality☆228May 8, 2017Updated 8 years ago
- Virus Identification By iteRative ANnoTation☆190Apr 15, 2024Updated last year
- A simple script to display stuff on a world map with R and ggplot☆17Feb 17, 2026Updated last month
- MetaPathways v2.0: A master-worker model for environmental Pathway/Genome Database construction on grids and clouds☆33Nov 26, 2015Updated 10 years ago
- Rapid prokaryotic genome annotation☆961Jan 6, 2026Updated 2 months ago
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆162Feb 13, 2026Updated last month
- SPAdes Genome Assembler☆919Updated this week
- Python package for detection of chimerism and contamination in prokaryotic genomes.☆82Mar 12, 2026Updated last week
- Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation☆31May 25, 2021Updated 4 years ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆323Updated this week
- Read alignment statistics for metagenomics☆392Updated this week
- ☆63Feb 27, 2024Updated 2 years ago
- MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics☆203Aug 25, 2025Updated 6 months ago