bioinformatics-centre / kaijuLinks
Fast taxonomic classification of metagenomic sequencing reads using a protein reference database
☆298Updated 8 months ago
Alternatives and similar repositories for kaiju
Users that are interested in kaiju are comparing it to the libraries listed below
Sorting:
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆361Updated 4 months ago
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆331Updated 10 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆338Updated 3 months ago
- Bacterial ribosomal RNA predictor☆266Updated this week
- Classifier for metagenomic sequences☆269Updated 6 months ago
- Rapid comparison and dereplication of genomes☆324Updated last month
- quality filtering tool for long reads☆381Updated 3 months ago
- Scan contig files against PubMLST typing schemes☆254Updated 3 weeks ago
- A tool to circularize genome assemblies☆249Updated last year
- Pilon is an automated genome assembly improvement and variant detection tool☆372Updated 3 years ago
- 🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results☆242Updated last year
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆399Updated last week
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆399Updated 6 months ago
- NCBI Prokaryotic Genome Annotation Pipeline☆362Updated last month
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆243Updated 4 years ago
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆224Updated 2 months ago
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆247Updated 2 weeks ago
- Rapid large-scale prokaryote pan genome analysis☆364Updated last month
- Tool to plot synteny and structural rearrangements between genomes☆335Updated 8 months ago
- An updated pipeline for pangenome investigation☆334Updated 9 months ago
- ☆270Updated 6 months ago
- Eukaryotic Genome Annotation Pipeline☆371Updated 5 months ago
- Filtering and trimming of long read sequencing data☆210Updated 2 years ago
- Build a partitioned pangenome graph from microbial genomes☆290Updated last week
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆208Updated last year
- Finds SNP sites from a multi-FASTA alignment file☆271Updated 5 years ago
- SortMeRNA: next-generation sequence filtering and alignment tool☆282Updated 4 months ago
- Synteny and Rearrangement Identifier☆435Updated 8 months ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆293Updated last year
- Fast Whole-Genome Similarity (ANI) Estimation☆445Updated 2 weeks ago