GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
☆615May 20, 2026Updated 2 months ago
Alternatives and similar repositories for GTDBTk
Users that are interested in GTDBTk are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆409Mar 2, 2026Updated 4 months ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆271Mar 20, 2025Updated last year
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆474Jul 28, 2023Updated 2 years ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆335Jun 3, 2026Updated last month
- Rapid comparison and dereplication of genomes☆349Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Fast Whole-Genome Similarity (ANI) Estimation☆471Dec 16, 2025Updated 7 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆664Jul 10, 2026Updated last week
- Read alignment statistics for metagenomics☆400Jul 10, 2026Updated last week
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆259May 13, 2026Updated 2 months ago
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆228Mar 24, 2026Updated 3 months ago
- geNomad: Identification of mobile genetic elements☆325Mar 29, 2026Updated 3 months ago
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆233Jul 9, 2026Updated 2 weeks ago
- Variational autoencoder for metagenomic binning☆330Apr 27, 2026Updated 2 months ago
- Fast genome-wide functional annotation through orthology assignment☆755May 22, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- DAS Tool☆177May 2, 2024Updated 2 years ago
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆418Jul 15, 2026Updated last week
- Rapid prokaryotic genome annotation☆992Jan 6, 2026Updated 6 months ago
- SemiBin: metagenomics binning with self-supervised deep learning☆172Updated this week
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).☆248Jul 10, 2026Updated last week
- hybrid assembly pipeline for bacterial genomes☆648Jul 7, 2026Updated 2 weeks ago
- Mass screening of contigs for antimicrobial and virulence genes☆502Updated this week
- AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and p…☆379Jul 12, 2026Updated last week
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆189Mar 17, 2026Updated 4 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- An updated pipeline for pangenome investigation☆367Jul 2, 2026Updated 3 weeks ago
- customizable pipeline to identify viral sequences from (meta)genomic data☆295Nov 28, 2024Updated last year
- Software for prediction of plasmid sequences in metagenomic assemblies☆111Jun 28, 2021Updated 5 years ago
- SPAdes Genome Assembler☆953Jun 16, 2026Updated last month
- Toolbox for comparative genomics of MAGs☆91Apr 28, 2026Updated 2 months ago
- Ultra-fast and memory-efficient (meta-)genome assembler☆721Oct 28, 2025Updated 8 months ago
- Prodigal Gene Prediction Software☆550Jan 23, 2024Updated 2 years ago
- Bioinformatics program inStrain☆191Mar 12, 2026Updated 4 months ago
- ATLAS - Three commands to start analyzing your metagenome data☆406May 28, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆314Feb 3, 2026Updated 5 months ago
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆193Updated this week
- A toolbox for improving metagenome-assembled genomes.☆64Jun 2, 2021Updated 5 years ago
- Virus Identification By iteRative ANnoTation☆198Apr 15, 2024Updated 2 years ago
- An analysis and visualization platform for 'omics data☆531Updated this week
- Python package for detection of chimerism and contamination in prokaryotic genomes.☆93May 11, 2026Updated 2 months ago
- Build a partitioned pangenome graph from microbial genomes☆307Updated this week