Ecogenomics / GTDBTkLinks
GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
☆573Updated this week
Alternatives and similar repositories for GTDBTk
Users that are interested in GTDBTk are comparing it to the libraries listed below
Sorting:
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆403Updated 3 weeks ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆604Updated last week
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆401Updated 7 months ago
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆459Updated 2 years ago
- Rapid large-scale prokaryote pan genome analysis☆369Updated 3 months ago
- Fast Whole-Genome Similarity (ANI) Estimation☆446Updated last month
- Mass screening of contigs for antimicrobial and virulence genes☆475Updated last week
- A complete pipeline for metagenomic analysis☆441Updated 3 weeks ago
- Rapid haploid variant calling and core genome alignment☆564Updated last month
- A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV☆456Updated last month
- Prodigal Gene Prediction Software☆524Updated 2 years ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆445Updated 3 months ago
- customizable pipeline to identify viral sequences from (meta)genomic data☆280Updated last year
- ATLAS - Three commands to start analyzing your metagenome data☆401Updated 2 months ago
- A flexible pipeline for complete analysis of bacterial genomes☆496Updated last month
- NCBI Prokaryotic Genome Annotation Pipeline☆366Updated this week
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆390Updated last month
- Eukaryotic Genome Annotation Pipeline☆378Updated 2 weeks ago
- hybrid assembly pipeline for bacterial genomes☆633Updated last year
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆366Updated 6 months ago
- Gene cluster comparison figure generator☆633Updated last month
- Read alignment statistics for metagenomics☆387Updated 3 weeks ago
- Genome assembly evaluation tool☆494Updated last year
- Rapid comparison and dereplication of genomes☆326Updated 3 months ago
- A genome visualization python package for comparative genomics☆388Updated 2 months ago
- AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and p…☆350Updated last week
- Fast genome-wide functional annotation through orthology assignment☆697Updated 7 months ago
- adapter trimmer for Oxford Nanopore reads☆380Updated last year
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆319Updated last week
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆336Updated 11 months ago