Ecogenomics / GTDBTkLinks
GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
☆532Updated last month
Alternatives and similar repositories for GTDBTk
Users that are interested in GTDBTk are comparing it to the libraries listed below
Sorting:
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆532Updated 2 weeks ago
- Mass screening of contigs for antimicrobial and virulence genes☆429Updated last year
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆376Updated last month
- NCBI Prokaryotic Genome Annotation Pipeline☆342Updated this week
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆430Updated last year
- Rapid large-scale prokaryote pan genome analysis☆353Updated 3 years ago
- A complete pipeline for metagenomic analysis☆421Updated this week
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆376Updated last month
- Fast Whole-Genome Similarity (ANI) Estimation☆416Updated last year
- A flexible pipeline for complete analysis of bacterial genomes☆464Updated 2 months ago
- Rapid haploid variant calling and core genome alignment☆530Updated last year
- Eukaryotic Genome Annotation Pipeline☆356Updated last week
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆416Updated 5 months ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆288Updated last week
- hybrid assembly pipeline for bacterial genomes☆602Updated 11 months ago
- Genome assembly evaluation tool☆445Updated 8 months ago
- Prodigal Gene Prediction Software☆492Updated last year
- customizable pipeline to identify viral sequences from (meta)genomic data☆260Updated 7 months ago
- A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV☆429Updated 2 months ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆346Updated last year
- ATLAS - Three commands to start analyzing your metagenome data☆393Updated 2 months ago
- RAxML Next Generation: faster, easier-to-use and more flexible☆429Updated 2 weeks ago
- Fast genome-wide functional annotation through orthology assignment☆633Updated last month
- Rapid comparison and dereplication of genomes☆302Updated last month
- Gene cluster comparison figure generator☆595Updated 7 months ago
- IQ-TREE software version 2: phylogenetics by maximum likelihood☆293Updated 2 months ago
- AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and p…☆316Updated 3 weeks ago
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆353Updated last month
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆312Updated 4 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆325Updated last year