Ecogenomics / GTDBTk
GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
☆495Updated last month
Alternatives and similar repositories for GTDBTk:
Users that are interested in GTDBTk are comparing it to the libraries listed below
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆357Updated 4 months ago
- Rapid large-scale prokaryote pan genome analysis☆329Updated 2 years ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆469Updated last month
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆374Updated 3 weeks ago
- A complete pipeline for metagenomic analysis☆392Updated 2 weeks ago
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆410Updated last year
- Eukaryotic Genome Annotation Pipeline☆329Updated this week
- Fast genome-wide functional annotation through orthology assignment☆585Updated 8 months ago
- NCBI Prokaryotic Genome Annotation Pipeline☆325Updated last week
- hybrid assembly pipeline for bacterial genomes☆578Updated 5 months ago
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆319Updated this week
- Rapid haploid variant calling and core genome alignment☆492Updated 6 months ago
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆298Updated 5 months ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆326Updated last year
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆261Updated last month
- Plotting scripts for long read sequencing data☆448Updated 3 months ago
- Mass screening of contigs for antimicrobial and virulence genes☆382Updated last year
- ATLAS - Three commands to start analyzing your metagenome data☆379Updated 2 weeks ago
- Sequence correction provided by ONT Research☆433Updated 3 months ago
- customizable pipeline to identify viral sequences from (meta)genomic data☆234Updated last month
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆343Updated last month
- NEW location of IQ-TREE software for efficient phylogenomic software by maximum likelihood http://www.iqtree.org☆261Updated last week
- De novo assembler for single molecule sequencing reads using repeat graphs☆802Updated 4 months ago
- Genome assembly evaluation tool☆416Updated 2 months ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆485Updated 11 months ago
- bioBakery tools for meta'omic profiling☆265Updated 3 months ago
- Gene cluster comparison figure generator☆551Updated last month
- Build a partitioned pangenome graph from microbial genomes☆247Updated last week
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆567Updated last month
- Synteny and Rearrangement Identifier☆355Updated last month