An analysis and visualization platform for 'omics data
☆505Feb 27, 2026Updated this week
Alternatives and similar repositories for anvio
Users that are interested in anvio are comparing it to the libraries listed below
Sorting:
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆607Feb 18, 2026Updated 2 weeks ago
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆582Feb 21, 2026Updated last week
- Fast taxonomic classification of metagenomic sequencing reads using a protein reference database☆299Apr 25, 2025Updated 10 months ago
- ATLAS - Three commands to start analyzing your metagenome data☆402Nov 28, 2025Updated 3 months ago
- DAS Tool☆168May 2, 2024Updated last year
- Assessing the quality of metagenome-derived genome bins using machine learning☆251Mar 20, 2025Updated 11 months ago
- Fast Whole-Genome Similarity (ANI) Estimation☆448Dec 16, 2025Updated 2 months ago
- Quickly search, compare, and analyze genomic and metagenomic data sets.☆539Feb 23, 2026Updated last week
- Read alignment statistics for metagenomics☆390Jan 16, 2026Updated last month
- Rapid comparison and dereplication of genomes☆327Nov 10, 2025Updated 3 months ago
- hybrid assembly pipeline for bacterial genomes☆634Jul 25, 2024Updated last year
- Scripts to download genomes from the NCBI FTP servers☆1,063Jul 28, 2025Updated 7 months ago
- Fast genome-wide functional annotation through orthology assignment☆704Jun 18, 2025Updated 8 months ago
- Gene cluster comparison figure generator☆636Dec 22, 2025Updated 2 months ago
- Rapid prokaryotic genome annotation☆957Jan 6, 2026Updated last month
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆403Jun 12, 2025Updated 8 months ago
- Ultra-fast and memory-efficient (meta-)genome assembler☆696Oct 28, 2025Updated 4 months ago
- Bioinformatics program inStrain☆181May 9, 2025Updated 9 months ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆320Feb 19, 2026Updated 2 weeks ago
- Application and Python module for average nucleotide identity analyses of microbes.☆217Jul 1, 2025Updated 8 months ago
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆181Feb 26, 2026Updated last week
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆460Jul 28, 2023Updated 2 years ago
- A user-friendly workflow for phylogenomics☆225Feb 5, 2026Updated last month
- MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics☆202Aug 25, 2025Updated 6 months ago
- Rapid large-scale prokaryote pan genome analysis☆371Nov 3, 2025Updated 4 months ago
- A complete pipeline for metagenomic analysis☆440Updated this week
- A flexible pipeline for complete analysis of bacterial genomes☆500Dec 19, 2025Updated 2 months ago
- Variational autoencoder for metagenomic binning☆317Feb 23, 2026Updated last week
- Classifier for metagenomic sequences☆271Jun 20, 2025Updated 8 months ago
- Build a partitioned pangenome graph from microbial genomes☆294Feb 25, 2026Updated last week
- customizable pipeline to identify viral sequences from (meta)genomic data☆282Nov 28, 2024Updated last year
- motus - a tool for marker gene-based OTU (mOTU) profiling☆170Dec 11, 2025Updated 2 months ago
- Prodigal Gene Prediction Software☆525Jan 23, 2024Updated 2 years ago
- Accurate sample inference from amplicon data with single nucleotide resolution☆539Feb 13, 2026Updated 2 weeks ago
- Genome assembly evaluation tool☆498Nov 14, 2024Updated last year
- SPAdes Genome Assembler☆912Feb 26, 2026Updated last week
- A tool for generating consensus long-read assemblies for bacterial genomes☆340Sep 11, 2025Updated 5 months ago
- An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…☆256Jul 27, 2024Updated last year
- A robust, extensible metagenomics pipeline☆175Updated this week