An analysis and visualization platform for 'omics data
☆512Apr 8, 2026Updated last week
Alternatives and similar repositories for anvio
Users that are interested in anvio are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆588Updated this week
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆622Feb 18, 2026Updated last month
- Fast taxonomic classification of metagenomic sequencing reads using a protein reference database☆302Apr 25, 2025Updated 11 months ago
- DAS Tool☆171May 2, 2024Updated last year
- Fast Whole-Genome Similarity (ANI) Estimation☆454Dec 16, 2025Updated 3 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Quickly search, compare, and analyze genomic and metagenomic data sets.☆542Apr 7, 2026Updated last week
- Assessing the quality of metagenome-derived genome bins using machine learning☆252Mar 20, 2025Updated last year
- ATLAS - Three commands to start analyzing your metagenome data☆404Nov 28, 2025Updated 4 months ago
- Read alignment statistics for metagenomics☆396Apr 8, 2026Updated last week
- Rapid comparison and dereplication of genomes☆335Nov 10, 2025Updated 5 months ago
- Gene cluster comparison figure generator☆637Dec 22, 2025Updated 3 months ago
- Ultra-fast and memory-efficient (meta-)genome assembler☆705Oct 28, 2025Updated 5 months ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆328Mar 30, 2026Updated 2 weeks ago
- Fast genome-wide functional annotation through orthology assignment☆722Mar 24, 2026Updated 3 weeks ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- hybrid assembly pipeline for bacterial genomes☆636Jul 25, 2024Updated last year
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆406Mar 2, 2026Updated last month
- Application and Python module for average nucleotide identity analyses of microbes.☆216Jul 1, 2025Updated 9 months ago
- Scripts to download genomes from the NCBI FTP servers☆1,071Apr 7, 2026Updated last week
- Bioinformatics program inStrain☆184Mar 12, 2026Updated last month
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆467Jul 28, 2023Updated 2 years ago
- MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics☆204Aug 25, 2025Updated 7 months ago
- Rapid prokaryotic genome annotation☆971Jan 6, 2026Updated 3 months ago
- A user-friendly workflow for phylogenomics☆226Feb 5, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A complete pipeline for metagenomic analysis☆439Updated this week
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆185Updated this week
- Variational autoencoder for metagenomic binning☆319Feb 23, 2026Updated last month
- SPAdes Genome Assembler☆925Mar 17, 2026Updated 3 weeks ago
- Rapid large-scale prokaryote pan genome analysis☆375Nov 3, 2025Updated 5 months ago
- Microbial RNA annotation☆289Updated this week
- Classifier for metagenomic sequences☆272Jun 20, 2025Updated 9 months ago
- customizable pipeline to identify viral sequences from (meta)genomic data☆286Nov 28, 2024Updated last year
- motus - a tool for marker gene-based OTU (mOTU) profiling☆173Mar 13, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A flexible pipeline for complete analysis of bacterial genomes☆502Apr 8, 2026Updated last week
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆181Mar 17, 2026Updated 3 weeks ago
- An updated pipeline for pangenome investigation☆353Jan 15, 2026Updated 3 months ago
- Build a partitioned pangenome graph from microbial genomes☆297Mar 30, 2026Updated 2 weeks ago
- Prodigal Gene Prediction Software☆532Jan 23, 2024Updated 2 years ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆106Updated this week
- A robust, extensible metagenomics pipeline☆175Updated this week