MGXlab / CAT_packLinks
CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metagenomes
☆224Updated 2 months ago
Alternatives and similar repositories for CAT_pack
Users that are interested in CAT_pack are comparing it to the libraries listed below
Sorting:
- Assessing the quality of metagenome-derived genome bins using machine learning☆241Updated 9 months ago
- Bacterial ribosomal RNA predictor☆266Updated this week
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆268Updated 2 months ago
- An updated pipeline for pangenome investigation☆334Updated 9 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆338Updated 3 months ago
- Rapid comparison and dereplication of genomes☆324Updated last month
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆164Updated 8 months ago
- Scan contig files against PubMLST typing schemes☆254Updated 3 weeks ago
- Pan-genome wide association studies☆205Updated last year
- BSR-Based Allele Calling Algorithm☆147Updated last week
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆247Updated 2 weeks ago
- customizable pipeline to identify viral sequences from (meta)genomic data☆278Updated last year
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆197Updated 3 months ago
- A tool to circularize genome assemblies☆249Updated last year
- Application and Python module for average nucleotide identity analyses of microbes.☆218Updated 5 months ago
- A user-friendly workflow for phylogenomics☆224Updated 2 weeks ago
- Build a partitioned pangenome graph from microbial genomes☆290Updated last week
- geNomad: Identification of mobile genetic elements☆279Updated last month
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆211Updated 11 months ago
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆174Updated last week
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆361Updated 4 months ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆208Updated last year
- CAMISIM: Simulating metagenomes and microbial communities☆220Updated last week
- Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins☆208Updated 4 months ago
- Pipeline for metabolic annotation of microbial genomes☆150Updated 9 months ago
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆159Updated 6 months ago
- DAS Tool☆163Updated last year
- Virus Identification By iteRative ANnoTation☆181Updated last year
- ☆223Updated 3 weeks ago
- Processing pipeline for pan-genome visulization and exploration☆142Updated 2 years ago