CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metagenomes
☆235Sep 17, 2026Updated this week
Alternatives and similar repositories for CAT_pack
Users that are interested in CAT_pack are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Read alignment statistics for metagenomics☆406Jul 10, 2026Updated 2 months ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆342Updated this week
- geNomad: Identification of mobile genetic elements☆334Mar 29, 2026Updated 5 months ago
- A toolbox for improving metagenome-assembled genomes.☆64Jun 2, 2021Updated 5 years ago
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆622May 20, 2026Updated 4 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Assessing the quality of metagenome-derived genome bins using machine learning☆278Mar 20, 2025Updated last year
- customizable pipeline to identify viral sequences from (meta)genomic data☆299Nov 28, 2024Updated last year
- Variational autoencoder for metagenomic binning☆331Apr 27, 2026Updated 4 months ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆119Sep 9, 2026Updated last week
- Rapid comparison and dereplication of genomes☆357Sep 4, 2026Updated 2 weeks ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆321Updated this week
- DAS Tool☆177May 2, 2024Updated 2 years ago
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆234Mar 24, 2026Updated 5 months ago
- ATLAS - Three commands to start analyzing your metagenome data☆406May 28, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A complete pipeline for metagenomic analysis☆454Aug 28, 2026Updated 3 weeks ago
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆477Jul 28, 2023Updated 3 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆55Jul 3, 2024Updated 2 years ago
- Virus Identification By iteRative ANnoTation☆204Apr 15, 2024Updated 2 years ago
- Binning Virus Genomes from Metagenomes☆76Jul 13, 2022Updated 4 years ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆680Aug 7, 2026Updated last month
- SemiBin: metagenomics binning with self-supervised deep learning☆175Updated this week
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆264May 13, 2026Updated 4 months ago
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆422Sep 10, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Source code of the VirSorter tool, also available as an App on CyVerse/iVirus (https://de.iplantcollaborative.org/de/)☆102Oct 3, 2020Updated 5 years ago
- Bioinformatics program inStrain☆193Mar 12, 2026Updated 6 months ago
- Fast Whole-Genome Similarity (ANI) Estimation☆482Updated this week
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆411Mar 2, 2026Updated 6 months ago
- ☆84Aug 23, 2026Updated 3 weeks ago
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆153Sep 8, 2026Updated last week
- MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics☆211Sep 8, 2026Updated last week
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆195Sep 8, 2026Updated last week
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆92Dec 27, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Improvement of metagenome-assembled genomes☆59Mar 17, 2020Updated 6 years ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆384Aug 1, 2025Updated last year
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆79Sep 7, 2026Updated last week
- An updated pipeline for pangenome investigation☆377Jul 2, 2026Updated 2 months ago
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆231May 9, 2026Updated 4 months ago
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆171Jun 10, 2026Updated 3 months ago
- Python package for detection of chimerism and contamination in prokaryotic genomes.☆94May 11, 2026Updated 4 months ago