MGXlab / CAT_packLinks
CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metagenomes
☆214Updated 2 months ago
Alternatives and similar repositories for CAT_pack
Users that are interested in CAT_pack are comparing it to the libraries listed below
Sorting:
- Assessing the quality of metagenome-derived genome bins using machine learning☆214Updated 3 months ago
- Rapid comparison and dereplication of genomes☆299Updated 2 weeks ago
- customizable pipeline to identify viral sequences from (meta)genomic data☆257Updated 6 months ago
- An updated pipeline for pangenome investigation☆304Updated 3 months ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆231Updated 3 months ago
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆151Updated 2 months ago
- BSR-Based Allele Calling Algorithm☆147Updated this week
- Scan contig files against PubMLST typing schemes☆234Updated 2 years ago
- Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data☆154Updated last week
- geNomad: Identification of mobile genetic elements☆246Updated 2 weeks ago
- Bacterial ribosomal RNA predictor☆246Updated last year
- A tool for generating consensus long-read assemblies for bacterial genomes☆324Updated last year
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆343Updated last year
- A user-friendly workflow for phylogenomics☆214Updated last week
- Processing pipeline for pan-genome visulization and exploration☆139Updated last year
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆190Updated last month
- Convert various sequence formats to FASTA☆136Updated 2 years ago
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆229Updated 2 years ago
- quality filtering tool for long reads☆343Updated last year
- Pan-genome wide association studies☆197Updated last year
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆374Updated last week
- Bioinformatics program inStrain☆173Updated last month
- Application and Python module for average nucleotide identity analyses of microbes.☆214Updated last month
- Assembly and binning of metagenomes☆239Updated this week
- A tool to circularize genome assemblies☆242Updated last year
- fast phage annotation program☆166Updated this week
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆147Updated last week
- Pipeline for metabolic annotation of microbial genomes☆147Updated 3 months ago
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆144Updated last week
- A tool for generating consensus long-read assemblies for bacterial genomes☆144Updated this week