Alternatives and similar repositories for CAT_pack

Users that are interested in CAT_pack are comparing it to the libraries listed below

• bluenote-1577 / sylph
  ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.
  ☆287Updated this week
• tseemann / barrnap
  Bacterial ribosomal RNA predictor
  ☆279Updated 3 weeks ago
• PacificBiosciences / pb-metagenomics-tools
  Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics
  ☆199Updated 4 months ago
• chklovski / CheckM2
  Assessing the quality of metagenome-derived genome bins using machine learning
  ☆247Updated 10 months ago
• MrOlm / drep
  Rapid comparison and dereplication of genomes
  ☆326Updated 2 months ago
• tseemann / mlst
  Scan contig files against PubMLST typing schemes
  ☆262Updated last month
• B-UMMI / chewBBACA
  BSR-Based Allele Calling Algorithm
  ☆147Updated last week
• apcamargo / genomad
  geNomad: Identification of mobile genetic elements
  ☆283Updated 2 months ago
• AdmiralenOla / Scoary
  Pan-genome wide association studies
  ☆207Updated last year
• gtonkinhill / panaroo
  An updated pipeline for pangenome investigation
  ☆339Updated 3 weeks ago
• cmks / DAS_Tool
  DAS Tool
  ☆169Updated last year
• jiarong / VirSorter2
  customizable pipeline to identify viral sequences from (meta)genomic data
  ☆280Updated last year
• phac-nml / mob-suite
  MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies
  ☆166Updated 9 months ago
• AstrobioMike / GToTree
  A user-friendly workflow for phylogenomics
  ☆225Updated last week
• rrwick / Trycycler
  A tool for generating consensus long-read assemblies for bacterial genomes
  ☆338Updated 4 months ago
• widdowquinn / pyani
  Application and Python module for average nucleotide identity analyses of microbes.
  ☆217Updated 7 months ago
• labgem / PPanGGOLiN
  Build a partitioned pangenome graph from microbial genomes
  ☆292Updated last month
• nf-core / mag
  Assembly and binning of metagenomes
  ☆273Updated last week
• sanger-pathogens / circlator
  A tool to circularize genome assemblies
  ☆252Updated last year
• jenniferlu717 / KrakenTools
  KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files
  ☆365Updated 6 months ago
• AnantharamanLab / METABOLIC
  A scalable high-throughput metabolic and biogeochemical functional trait profiler
  ☆218Updated last year
• wdecoster / chopper
  ☆231Updated this week
• tseemann / shovill
  ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads
  ☆252Updated last month
• cruizperez / MicrobeAnnotator
  Pipeline for metabolic annotation of microbial genomes
  ☆150Updated 10 months ago
• neherlab / pan-genome-analysis
  Processing pipeline for pan-genome visulization and exploration
  ☆143Updated 2 years ago
• biobakery / humann
  HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).
  ☆232Updated 2 weeks ago
• biobakery / phylophlan
  Precise phylogenetic analysis of microbial isolates and genomes from metagenomes
  ☆158Updated 7 months ago
• rrwick / Autocycler
  A tool for generating consensus long-read assemblies for bacterial genomes
  ☆211Updated this week
• schneebergerlab / plotsr
  Tool to plot synteny and structural rearrangements between genomes
  ☆340Updated 10 months ago
• nf-core / taxprofiler
  Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
  ☆177Updated last week