MGXlab / CAT_packLinks
CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metagenomes
☆223Updated 3 weeks ago
Alternatives and similar repositories for CAT_pack
Users that are interested in CAT_pack are comparing it to the libraries listed below
Sorting:
- Assessing the quality of metagenome-derived genome bins using machine learning☆235Updated 7 months ago
- Bacterial ribosomal RNA predictor☆259Updated 2 years ago
- Scan contig files against PubMLST typing schemes☆252Updated 3 years ago
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆161Updated 7 months ago
- An updated pipeline for pangenome investigation☆323Updated 8 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆334Updated 2 months ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆262Updated last month
- Pan-genome wide association studies☆205Updated last year
- Rapid comparison and dereplication of genomes☆315Updated last week
- A user-friendly workflow for phylogenomics☆221Updated 3 weeks ago
- customizable pipeline to identify viral sequences from (meta)genomic data☆273Updated 11 months ago
- geNomad: Identification of mobile genetic elements☆269Updated last week
- Application and Python module for average nucleotide identity analyses of microbes.☆218Updated 4 months ago
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆240Updated 2 years ago
- Processing pipeline for pan-genome visulization and exploration☆142Updated 2 years ago
- DAS Tool☆162Updated last year
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆195Updated last month
- BSR-Based Allele Calling Algorithm☆148Updated last week
- Build a partitioned pangenome graph from microbial genomes☆285Updated 2 weeks ago
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆159Updated 5 months ago
- CAMISIM: Simulating metagenomes and microbial communities☆218Updated this week
- A tool to circularize genome assemblies☆248Updated last year
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆208Updated 9 months ago
- Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins☆206Updated 2 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆199Updated 3 weeks ago
- Pipeline for metabolic annotation of microbial genomes☆150Updated 7 months ago
- fast phage annotation program☆184Updated last week
- snipit: summarise snps relative to your reference sequence☆162Updated last month
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆355Updated 3 months ago
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).☆219Updated 3 weeks ago