CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metagenomes
☆225Jan 20, 2026Updated last month
Alternatives and similar repositories for CAT_pack
Users that are interested in CAT_pack are comparing it to the libraries listed below
Sorting:
- Read alignment statistics for metagenomics☆390Jan 16, 2026Updated last month
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆320Feb 19, 2026Updated last week
- geNomad: Identification of mobile genetic elements☆291Nov 10, 2025Updated 3 months ago
- A toolbox for improving metagenome-assembled genomes.☆64Jun 2, 2021Updated 4 years ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆251Mar 20, 2025Updated 11 months ago
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆580Feb 21, 2026Updated last week
- customizable pipeline to identify viral sequences from (meta)genomic data☆281Nov 28, 2024Updated last year
- Variational autoencoder for metagenomic binning☆317Updated this week
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆294Feb 3, 2026Updated 3 weeks ago
- A complete pipeline for metagenomic analysis☆441Jan 21, 2026Updated last month
- Rapid comparison and dereplication of genomes☆327Nov 10, 2025Updated 3 months ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆104Jan 27, 2026Updated last month
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆218Jan 27, 2025Updated last year
- ATLAS - Three commands to start analyzing your metagenome data☆402Nov 28, 2025Updated 3 months ago
- DAS Tool☆168May 2, 2024Updated last year
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆607Feb 18, 2026Updated last week
- Downstream processing of VAMB binning for Viral Elucidation☆54Jul 3, 2024Updated last year
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆235Oct 12, 2025Updated 4 months ago
- Virus Identification By iteRative ANnoTation☆186Apr 15, 2024Updated last year
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆460Jul 28, 2023Updated 2 years ago
- Bioinformatics program inStrain☆181May 9, 2025Updated 9 months ago
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆147Updated this week
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆393Dec 13, 2025Updated 2 months ago
- ☆69Mar 10, 2024Updated last year
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆403Jun 12, 2025Updated 8 months ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆366Aug 1, 2025Updated 7 months ago
- Binning Virus Genomes from Metagenomes☆72Jul 13, 2022Updated 3 years ago
- Source code of the VirSorter tool, also available as an App on CyVerse/iVirus (https://de.iplantcollaborative.org/de/)☆101Oct 3, 2020Updated 5 years ago
- SemiBin: metagenomics binning with self-supervised deep learning☆155Feb 19, 2026Updated last week
- Fast Whole-Genome Similarity (ANI) Estimation☆447Dec 16, 2025Updated 2 months ago
- MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics☆202Aug 25, 2025Updated 6 months ago
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆181Updated this week
- Mass screening of contigs for antimicrobial and virulence genes☆480Jan 31, 2026Updated last month
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆168Apr 16, 2025Updated 10 months ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆87Dec 27, 2024Updated last year
- Python package for detection of chimerism and contamination in prokaryotic genomes.☆81Nov 23, 2023Updated 2 years ago
- Fast genome-wide functional annotation through orthology assignment☆701Jun 18, 2025Updated 8 months ago
- CAMISIM: Simulating metagenomes and microbial communities☆222Feb 18, 2026Updated last week
- An updated pipeline for pangenome investigation☆345Jan 15, 2026Updated last month