biobakery / MetaPhlAn
MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data
☆323Updated 2 weeks ago
Alternatives and similar repositories for MetaPhlAn:
Users that are interested in MetaPhlAn are comparing it to the libraries listed below
- bioBakery tools for meta'omic profiling☆269Updated 4 months ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆326Updated last year
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆413Updated last year
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆219Updated 4 years ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆360Updated 5 months ago
- Eukaryotic Genome Annotation Pipeline☆333Updated last month
- ☆231Updated 8 months ago
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆302Updated 6 months ago
- TransDecoder source☆285Updated 4 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆481Updated this week
- Fast genome-wide functional annotation through orthology assignment☆588Updated 9 months ago
- A complete pipeline for metagenomic analysis☆393Updated this week
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆377Updated 3 weeks ago
- Pilon is an automated genome assembly improvement and variant detection tool☆347Updated 2 years ago
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).☆184Updated 6 months ago
- Scan contig files against PubMLST typing schemes☆212Updated 2 years ago
- Mass screening of contigs for antimicrobial and virulence genes☆389Updated last year
- A tool for generating consensus long-read assemblies for bacterial genomes☆314Updated 8 months ago
- Rapid large-scale prokaryote pan genome analysis☆332Updated 2 years ago
- Fast and accurate de novo assembler for long reads☆379Updated 9 months ago
- quality filtering tool for long reads☆319Updated last year
- MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!☆248Updated 2 months ago
- Rapid comparison and dereplication of genomes☆275Updated 2 months ago
- Plotting scripts for long read sequencing data☆460Updated 2 weeks ago
- NCBI Prokaryotic Genome Annotation Pipeline☆327Updated 3 weeks ago
- customizable pipeline to identify viral sequences from (meta)genomic data☆237Updated 2 months ago
- Sequence correction provided by ONT Research☆436Updated 4 months ago
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆202Updated 2 months ago
- Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis☆305Updated last year
- A genome visualization python package for comparative genomics☆308Updated last month