Alternatives and similar repositories for HiCAT:

Users that are interested in HiCAT are comparing it to the libraries listed below

• baozg / phased-assembly-check
  ☆28Updated 2 weeks ago
• amsession / Kmer-based-Subgenome-Mapping
  ☆20Updated 5 months ago
• CAFS-bioinformatics / LR_Gapcloser
  use long sequenced reads to close gaps in assemblies
  ☆36Updated 6 years ago
• JanaSperschneider / FindTelomeres
  A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files
  ☆32Updated 2 years ago
• simon19891216 / CentIER
  ☆27Updated 4 months ago
• JM-SONG / GenomeSyn
  ☆22Updated 2 years ago
• zy-optimistic / GAEP
  A genome assembly assessment pipeline.
  ☆37Updated last year
• ShiuLab / PseudogenePipeline
  ☆36Updated last year
• ShuaiNIEgithub / Centromics
  Centromics: visualing centromeres with multiple omics data
  ☆17Updated last year
• i10labtitech / GINGER
  ☆27Updated last year
• JiaoLab2021 / SynDiv
  A tool for quick and accurate calculation of syntenic diversity.
  ☆31Updated last month
• schmeing / gapless
  Gapless provides combined scaffolding, gap-closing and assembly correction with long reads
  ☆35Updated last year
• JiaoLab2021 / EVG
  A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads
  ☆37Updated 6 months ago
• Jianwei-Zhang / DEGAP
  Dynamic Elongation of a Genome Assembly Path
  ☆20Updated 8 months ago
• chenym1 / genetribe
  A tool for performing collinearity-incorporating homology inference
  ☆28Updated last year
• zhangrengang / Centromics
  Centromics: visualing centromeres with multiple omics data
  ☆22Updated 2 months ago
• Argonum-Clever2 / mike
  ☆28Updated 8 months ago
• Yandell-Lab / maker
  Genome Annotation Pipeline
  ☆34Updated 4 months ago
• baozg / assembly-annotation-pipeline
  Plant genome assembly and annotation pipeline using snakemake
  ☆35Updated last year
• jkimlab / DESCHRAMBLER
  ☆21Updated 10 months ago
• Kirovez / pyTanFinder
  Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results
  ☆12Updated 5 years ago
• obenno / ShinySyn
  A shiny application to visualize MCscan result
  ☆34Updated 2 years ago
• schneebergerlab / AMPRIL-genomes
  scripts for the project of seven thaliana genomes assembly
  ☆38Updated 3 years ago
• lurebgi / BOPsexChr
  Analyses of sex chromosome evolution in songbirds
  ☆15Updated 5 years ago
• yanyew / SynGAP
  ☆31Updated 2 months ago
• shelkmike / Mabs
  Mabs, a genome assembly tool which optimizes parameters of Hifiasm and Flye
  ☆28Updated last month
• yhw320 / PanSyn
  ☆17Updated 11 months ago
• tangerzhang / calc_switchErr
  ☆24Updated 3 years ago
• wjian8 / psvcp_v1.01
  Pan-genome Construction and Population Structure Variation Calling pipeline
  ☆36Updated 4 months ago
• lardo / khaper
  ☆27Updated 2 years ago