xjtu-omics / HiCAT
HiCAT new project
☆27Updated 11 months ago
Related projects ⓘ
Alternatives and complementary repositories for HiCAT
- ☆20Updated 3 months ago
- ☆22Updated 2 months ago
- use long sequenced reads to close gaps in assemblies☆35Updated 6 years ago
- ☆28Updated 2 months ago
- ☆36Updated last year
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆33Updated 2 years ago
- A genome assembly assessment pipeline.☆36Updated last year
- ☆21Updated 2 years ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆30Updated last month
- Centromics: visualing centromeres with multiple omics data☆17Updated 10 months ago
- A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads☆36Updated 4 months ago
- Centromics: visualing centromeres with multiple omics data☆22Updated 2 weeks ago
- ☆24Updated 3 years ago
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- A tool for quick and accurate calculation of syntenic diversity.☆29Updated 2 months ago
- Analyses of sex chromosome evolution in songbirds☆15Updated 5 years ago
- ☆41Updated 6 months ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆33Updated last year
- ☆39Updated 2 years ago
- ☆24Updated 10 months ago
- Tool for globally phasing diploid assembly graphs with orthogonal data☆38Updated 3 months ago
- ☆26Updated 6 months ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆33Updated 2 months ago
- ☆28Updated 2 years ago
- Gene model transfer from closely related reference genomes using cDNA alignments☆10Updated 4 years ago
- This is a method to find telomeres and centromeres in plants.☆37Updated last year
- A shiny application to visualize MCscan result☆33Updated 2 years ago
- Genome Annotation Pipeline☆32Updated 3 months ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆16Updated last year
- ☆29Updated last week