xjtu-omics / HiCATLinks
HiCAT new project
☆28Updated 3 months ago
Alternatives and similar repositories for HiCAT
Users that are interested in HiCAT are comparing it to the libraries listed below
Sorting:
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes☆36Updated 2 months ago
- ☆40Updated 2 years ago
- use long sequenced reads to close gaps in assemblies☆37Updated 6 years ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆34Updated 10 months ago
- ☆37Updated last month
- A genome assembly assessment pipeline.☆37Updated last year
- ☆21Updated last year
- HELIANO is a software for detection and classification of Helitron-like elements.☆29Updated 2 months ago
- ☆31Updated 5 months ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆32Updated 7 months ago
- Centromics: visualing centromeres with multiple omics data☆19Updated last year
- ☆25Updated 3 years ago
- Centromics: visualing centromeres with multiple omics data☆24Updated 5 months ago
- a Semi-automated pipeline for assembling T2T genome☆20Updated 3 months ago
- Automated pipeline for running CoalHMM☆13Updated last year
- ☆28Updated last year
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆67Updated 4 years ago
- A shiny application to visualize MCscan result☆37Updated 2 years ago
- ☆30Updated 7 months ago
- Toolkit for evolutionary analyses of linkage groups☆32Updated last year
- ☆22Updated 3 years ago
- ☆41Updated 2 years ago
- Genome Annotation Pipeline☆36Updated last year
- C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on Pore-C, HiFi-C/CiFi or Hi-C.☆50Updated last month
- A personal pipeline to calculate Ka,Ks and Ka/Ks using PAML-yn00 with YN method☆10Updated 6 months ago
- A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads☆48Updated 3 months ago
- This is a method to find telomeres and centromeres in plants.☆41Updated 2 years ago
- Identification of transposable element families from pangenome polymorphisms☆53Updated 2 months ago