HiCAT new project
☆40May 18, 2025Updated last year
Alternatives and similar repositories for HiCAT
Users that are interested in HiCAT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Centromere mapping and annotation pipeline☆28Jun 26, 2026Updated 3 months ago
- ☆29May 12, 2026Updated 5 months ago
- ☆42May 19, 2025Updated last year
- Misassembly Identifier☆28Sep 5, 2026Updated last month
- A comprehensive C++ telomere annotation tool for genome assemblies and reads.☆18Oct 2, 2026Updated last week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Make colorful identity heatmaps of genomic sequence☆140May 24, 2024Updated 2 years ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆14Apr 28, 2020Updated 6 years ago
- Telomere compliment tools☆27Nov 17, 2025Updated 10 months ago
- ☆33Sep 29, 2026Updated 2 weeks ago
- Identify and find telomeres, or telomeric repeats in a genome.☆177Updated this week
- ☆21Jul 12, 2026Updated 3 months ago
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated last year
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆31Mar 5, 2018Updated 8 years ago
- ☆23Aug 8, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A python package from Pacific Biosciences to analyze centromeric sequences☆21Oct 7, 2015Updated 11 years ago
- ☆16Apr 3, 2023Updated 3 years ago
- Repeat-aware polishing genomes assembled using HiFi long reads☆105Apr 7, 2026Updated 6 months ago
- A genome-scale, fast, and precise segmental duplications mapping tool☆36Sep 11, 2024Updated 2 years ago
- ☆16Jul 25, 2021Updated 5 years ago
- plot genome alignment synteny☆21May 25, 2020Updated 6 years ago
- ☆23Jan 13, 2026Updated 8 months ago
- Centromics: visualing centromeres with multiple omics data☆28Mar 4, 2025Updated last year
- A tool for performing collinearity-incorporating homology inference☆34Jul 17, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆99Dec 3, 2025Updated 10 months ago
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆188Jun 23, 2026Updated 3 months ago
- Convert Tandem Repeat Finder dat file output into gff3 format☆32Oct 3, 2026Updated last week
- The complete reference genome for grapevine (Vitis vinifera L.) genetics and breeding☆14Feb 11, 2025Updated last year
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆211Nov 23, 2025Updated 10 months ago
- RepeatIdentifier☆75Mar 19, 2025Updated last year
- ☆30Mar 4, 2022Updated 4 years ago
- Scripts to do haplotype analysis on pan genomes.☆20Sep 24, 2020Updated 6 years ago
- Annotate Olfactory receptor CDS from genome☆11Apr 29, 2023Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- SRF: Satellite Repeat Finder☆110Jan 8, 2024Updated 2 years ago
- A genome assembly assessment pipeline.☆39Jun 5, 2026Updated 4 months ago
- ☆19Feb 24, 2026Updated 7 months ago
- ☆24Feb 26, 2026Updated 7 months ago
- GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…☆54Feb 27, 2020Updated 6 years ago
- Hi-C data processing pipeline☆42Feb 27, 2024Updated 2 years ago
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆287Aug 10, 2026Updated 2 months ago