A organelle de novo genome assembly toolkit
☆89Feb 22, 2025Updated last year
Alternatives and similar repositories for oatk
Users that are interested in oatk are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆12Jan 8, 2026Updated 9 months ago
- Yet another Hi-C scaffolding tool☆186Nov 4, 2024Updated last year
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Apr 25, 2025Updated last year
- An efficient assembly tool for plant mitochondrial genome☆72May 31, 2024Updated 2 years ago
- Organellar genome assembly☆33Sep 12, 2026Updated last month
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆288Aug 10, 2026Updated 2 months ago
- A chromosome-level polyploid phasing scaffolding tool☆29Oct 19, 2026Updated 2 weeks ago
- A genome completeness evaluation tool based on miniprot☆270Oct 7, 2026Updated 3 weeks ago
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated 2 years ago
- k-mer based assembly evaluation☆357Jul 6, 2026Updated 3 months ago
- A program for assessing the T2T genome continuity and completeness☆98Oct 13, 2026Updated 3 weeks ago
- ☆95Oct 23, 2026Updated last week
- This is the standalone version of the EviAnn pipeline☆188Oct 7, 2026Updated 3 weeks ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆422Oct 27, 2026Updated last week
- Identify and find telomeres, or telomeric repeats in a genome.☆180Oct 23, 2026Updated last week
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆192Jun 23, 2026Updated 4 months ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆204May 11, 2025Updated last year
- High-precision TE Annotator☆168Dec 4, 2025Updated 11 months ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆70May 26, 2026Updated 5 months ago
- To phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.☆77Jun 4, 2026Updated 5 months ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆818May 31, 2026Updated 5 months ago
- A haplotype-resolved and telomere-to-telomere genome assembly pipeline (PHap) tailored for autopolyploids, relying solely on common seque…☆31Jul 29, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- source code for EVM☆130Sep 22, 2026Updated last month
- ☆168Aug 11, 2026Updated 2 months ago
- Make colorful identity heatmaps of genomic sequence☆141May 24, 2024Updated 2 years ago
- OpenGL Powered Pretext Contact Map Viewer☆63Oct 22, 2026Updated last week
- WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes☆176Nov 4, 2025Updated 11 months ago
- Using Deep Learning to predict gene annotations☆315Oct 27, 2026Updated last week
- ☆27Jun 27, 2026Updated 4 months ago
- C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on 3C-based data (Pore-C, CiFi, Hi-C, Omni-C).☆115Jul 23, 2026Updated 3 months ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆23Jul 26, 2023Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Graph-based Sequence Assembly Toolkit☆24Sep 11, 2026Updated last month
- JTK -- a regional diploid genome assembler☆27Apr 22, 2026Updated 6 months ago
- PhaseGrass, a reference-based phasing workflow generating chromosome-level haplotype-resolved diploid assembly for highly heterozygous ge…☆18Jun 2, 2026Updated 5 months ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆189May 17, 2024Updated 2 years ago
- Serial of Similarity Matrix for subgenome partition☆11Feb 6, 2025Updated last year
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆67May 17, 2026Updated 5 months ago
- Deep Learning Framework for Transposable Element Discovery and Annotation☆12Aug 18, 2026Updated 2 months ago