c-zhou / oatkLinks
A organelle de novo genome assembly toolkit
☆69Updated 7 months ago
Alternatives and similar repositories for oatk
Users that are interested in oatk are comparing it to the libraries listed below
Sorting:
- TSEBRA: Transcript Selector for BRAKER☆48Updated 10 months ago
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆69Updated last week
- use long sequenced reads to close gaps in assemblies☆39Updated 7 years ago
- TEtrimmer: a novel tool to automate manual curation of transposable elements☆76Updated 2 weeks ago
- Annotation helper tool for the manual curation of transposable element consensus sequences☆50Updated 6 months ago
- ☆44Updated 8 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- ☆79Updated 2 months ago
- A program for assessing the T2T genome continuity☆84Updated last week
- PacBio BAM toolkit☆46Updated 6 months ago
- RepeatIdentifier☆69Updated 6 months ago
- A program to call variants from genome alignment☆81Updated 4 months ago
- Detecting multi-genome synteny using minimizer graph mapping☆82Updated last month
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆50Updated 2 months ago
- A tool for evaluating long-read de novo assembly results☆43Updated last year
- A tool for evaluate long-read de novo assembly results☆48Updated last year
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆68Updated 4 years ago
- Identification of transposable element families from pangenome polymorphisms☆53Updated 3 months ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆111Updated last month
- Neural network classification of TE☆96Updated 3 months ago
- Show pangenome graphs in an easy way☆56Updated last month
- Call select base modifications in PacBio HiFi reads☆14Updated 7 months ago
- Pipeline to convert a haploid assembly into diploid☆103Updated 8 months ago
- Splitting of sequence reads by internal adapter sequence search☆51Updated 2 years ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 7 months ago
- MUM&Co is a simple bash script that uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation☆72Updated 2 weeks ago
- TGS scaffolding☆46Updated 3 years ago
- A software to assemble chloroplast and mitochodrial genomes using PacBio data☆40Updated 5 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆58Updated 2 years ago
- ☆117Updated last week