c-zhou / oatkLinks
A organelle de novo genome assembly toolkit
☆73Updated 11 months ago
Alternatives and similar repositories for oatk
Users that are interested in oatk are comparing it to the libraries listed below
Sorting:
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆77Updated 2 months ago
- use long sequenced reads to close gaps in assemblies☆40Updated 7 years ago
- A program for assessing the T2T genome continuity☆92Updated last month
- TSEBRA: Transcript Selector for BRAKER☆49Updated 2 months ago
- TEtrimmer: a novel tool to automate manual curation of transposable elements☆111Updated 2 weeks ago
- Annotation helper tool for the manual curation of transposable element consensus sequences☆53Updated 11 months ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69Updated 4 years ago
- Neural network classification of TE☆97Updated 4 months ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆36Updated 3 years ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies