A organelle de novo genome assembly toolkit
☆74Feb 22, 2025Updated last year
Alternatives and similar repositories for oatk
Users that are interested in oatk are comparing it to the libraries listed below
Sorting:
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Apr 25, 2025Updated 10 months ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 6 months ago
- ☆89Dec 3, 2025Updated 3 months ago
- OpenGL Powered Pretext Contact Map Viewer☆56Updated this week
- This is the standalone version of the EviAnn pipeline☆139Feb 5, 2026Updated last month
- A program for assessing the T2T genome continuity☆93Updated this week
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆254Jan 5, 2026Updated 2 months ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆62Feb 27, 2026Updated last week
- Yet another Hi-C scaffolding tool☆172Nov 4, 2024Updated last year
- A genome completeness evaluation tool based on miniprot☆235Sep 18, 2025Updated 5 months ago
- JTK -- a regional diploid genome assembler☆25Oct 20, 2024Updated last year
- Make colorful identity heatmaps of genomic sequence☆128May 24, 2024Updated last year
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆167Oct 29, 2025Updated 4 months ago
- An efficient assembly tool for plant mitochondrial genome☆69May 31, 2024Updated last year
- pangenome from maximal blocks in an MSA☆11Sep 17, 2024Updated last year
- High-precision TE Annotator☆151Dec 4, 2025Updated 3 months ago
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆81Dec 3, 2025Updated 3 months ago
- k-mer based assembly evaluation☆339Jun 28, 2024Updated last year
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆383Feb 24, 2026Updated last week
- a gap-filling tools of genome in complex region.☆24Dec 30, 2025Updated 2 months ago
- source code for EVM☆122Nov 29, 2024Updated last year
- Repeat-aware polishing genomes assembled using HiFi long reads☆98Nov 12, 2025Updated 3 months ago
- haplotypic duplication identification tool☆275Oct 30, 2025Updated 4 months ago
- ☆44Jul 23, 2025Updated 7 months ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆188May 17, 2024Updated last year
- WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes☆159Nov 4, 2025Updated 4 months ago
- Evaluating genome assemblies☆115Updated this week
- ☆41May 19, 2025Updated 9 months ago
- Implementation of ToL genome assembly workflows☆27Updated this week
- This is a method to find telomeres and centromeres in plants.☆42Jun 17, 2023Updated 2 years ago
- ANI based satellite annotation☆23Nov 7, 2025Updated 3 months ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆191May 11, 2025Updated 9 months ago
- ☆71Jan 15, 2026Updated last month
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆43Jan 7, 2026Updated last month
- To phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.☆70Mar 23, 2025Updated 11 months ago
- Improved long-read assembly by preserving contained reads☆30Aug 22, 2024Updated last year
- ☆119Oct 10, 2025Updated 4 months ago
- ☆24Apr 22, 2025Updated 10 months ago
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆203Nov 23, 2025Updated 3 months ago