c-zhou / oatkLinks
A organelle de novo genome assembly toolkit
☆63Updated 5 months ago
Alternatives and similar repositories for oatk
Users that are interested in oatk are comparing it to the libraries listed below
Sorting:
- Annotation helper tool for the manual curation of transposable element consensus sequences☆49Updated 5 months ago
- TSEBRA: Transcript Selector for BRAKER☆47Updated 8 months ago
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆65Updated 2 weeks ago
- TEtrimmer: a novel tool to automate manual curation of transposable elements☆75Updated this week
- use long sequenced reads to close gaps in assemblies☆37Updated 6 years ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆49Updated 3 weeks ago
- ☆44Updated 8 years ago
- A program for assessing the T2T genome continuity☆83Updated last month
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- A tool for evaluate long-read de novo assembly results☆48Updated 11 months ago
- ☆76Updated last month
- RepeatIdentifier☆67Updated 4 months ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆67Updated 4 years ago
- A program to call variants from genome alignment☆81Updated 3 months ago
- A software to assemble chloroplast and mitochodrial genomes using PacBio data☆40Updated 5 years ago
- Identification of transposable element families from pangenome polymorphisms☆52Updated 2 months ago
- Show pangenome graphs in an easy way☆56Updated this week
- Mapping pipeline for data generated using Arima-HiC☆79Updated last year
- A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads☆48Updated 3 months ago
- PacBio BAM toolkit☆43Updated 5 months ago
- Neural network classification of TE☆92Updated 2 months ago
- A shiny application to visualize MCscan result☆37Updated 2 years ago
- MUM&Co is a simple bash script that uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation☆71Updated 4 months ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆58Updated 2 years ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆111Updated this week
- Detecting multi-genome synteny using minimizer graph mapping☆79Updated 3 months ago
- Evaluate variant calls and its combination with k-mer multiplicity☆67Updated 2 years ago
- A novel genome assembly pipeline based on deep learning☆62Updated 8 months ago
- A snakemake workflow for de novo genome assembly. It produces chromosome-scale primary/phased assemblies complete with organelles (mitoch…☆29Updated 2 months ago
- Portable solution to generate genome alignment chains using lastz☆57Updated 2 months ago