A organelle de novo genome assembly toolkit
☆82Feb 22, 2025Updated last year
Alternatives and similar repositories for oatk
Users that are interested in oatk are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Apr 25, 2025Updated last year
- Yet another Hi-C scaffolding tool☆183Nov 4, 2024Updated last year
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated 2 years ago
- ☆94Jul 31, 2026Updated last month
- Organellar genome assembly☆32Sep 12, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆27Jun 27, 2026Updated 2 months ago
- An efficient assembly tool for plant mitochondrial genome☆71May 31, 2024Updated 2 years ago
- A genome completeness evaluation tool based on miniprot☆267Aug 17, 2026Updated last month
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆284Aug 10, 2026Updated last month
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆184Jun 23, 2026Updated 3 months ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆419Aug 25, 2026Updated 3 weeks ago
- This is the standalone version of the EviAnn pipeline☆186Sep 10, 2026Updated 2 weeks ago
- k-mer based assembly evaluation☆355Jul 6, 2026Updated 2 months ago
- JTK -- a regional diploid genome assembler☆27Apr 22, 2026Updated 5 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- OpenGL Powered Pretext Contact Map Viewer☆63Updated this week
- Using Deep Learning to predict gene annotations☆307Jul 22, 2026Updated 2 months ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆201May 11, 2025Updated last year
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated last year
- Identify and find telomeres, or telomeric repeats in a genome.☆177Nov 24, 2025Updated 10 months ago
- A program for assessing the T2T genome continuity and completeness☆97Sep 8, 2026Updated 2 weeks ago
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆66May 17, 2026Updated 4 months ago
- PhaseGrass, a reference-based phasing workflow generating chromosome-level haplotype-resolved diploid assembly for highly heterozygous ge…☆17Jun 2, 2026Updated 3 months ago
- Make colorful identity heatmaps of genomic sequence☆139May 24, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆159Aug 11, 2026Updated last month
- High-precision TE Annotator☆165Dec 4, 2025Updated 9 months ago
- Evaluating genome assemblies☆127Mar 3, 2026Updated 6 months ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆814May 31, 2026Updated 3 months ago
- haplotypic duplication identification tool☆295Oct 30, 2025Updated 10 months ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆189May 17, 2024Updated 2 years ago
- A Nextflow pipeline for the production of genome assemblies from long reads and Hi-C data for the Tree of Life project☆38Sep 11, 2026Updated last week
- A novel genome assembly pipeline based on deep learning☆71Dec 2, 2024Updated last year
- Repeat-aware polishing genomes assembled using HiFi long reads☆105Apr 7, 2026Updated 5 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆180Oct 20, 2024Updated last year
- ☆42May 19, 2025Updated last year
- C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on 3C-based data (Pore-C, CiFi, Hi-C, Omni-C).☆111Jul 23, 2026Updated 2 months ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆250Sep 6, 2024Updated 2 years ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆68May 26, 2026Updated 3 months ago
- ☆124Sep 11, 2026Updated last week
- To phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.☆76Jun 4, 2026Updated 3 months ago