☆38Oct 6, 2025Updated 4 months ago
Alternatives and similar repositories for NucFreq
Users that are interested in NucFreq are comparing it to the libraries listed below
Sorting:
- Evaluating genome assemblies☆115Jan 11, 2026Updated last month
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 6 months ago
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆15Feb 20, 2023Updated 3 years ago
- Make colorful identity heatmaps of genomic sequence☆128May 24, 2024Updated last year
- Phasing reads with secondary alignments☆22Nov 30, 2024Updated last year
- ☆39Feb 22, 2023Updated 3 years ago
- Tool for globally phasing diploid assembly graphs with orthogonal data☆43Nov 25, 2024Updated last year
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated 9 months ago
- ☆38Dec 29, 2025Updated 2 months ago
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Apr 25, 2025Updated 10 months ago
- Transformer-based sequence correction method for genome assembly polishing☆99Mar 11, 2025Updated 11 months ago
- pangenome analyses for complete genomes of great apes (and gibbon)☆20Oct 12, 2024Updated last year
- Code repository for the T2T-Y paper☆24Jul 11, 2023Updated 2 years ago
- ☆31Feb 14, 2026Updated 2 weeks ago
- ☆18Jan 29, 2025Updated last year
- Repeat-aware polishing genomes assembled using HiFi long reads☆98Nov 12, 2025Updated 3 months ago
- ☆13May 27, 2025Updated 9 months ago
- assembly evaluation tool☆35May 11, 2022Updated 3 years ago
- Consensus genome annotation using OMA☆31Jan 14, 2026Updated last month
- Simple pileup-based variant caller☆94Apr 25, 2025Updated 10 months ago
- A program for assessing the T2T genome continuity☆92Dec 14, 2025Updated 2 months ago
- ☆146Nov 5, 2025Updated 3 months ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Aug 1, 2024Updated last year
- SINE annotation tool for plant genomes☆18Jan 21, 2024Updated 2 years ago
- Long read aligner for cyclic and acyclic pangenome graphs☆40Dec 20, 2023Updated 2 years ago
- Identify and find telomeres, or telomeric repeats in a genome.☆158Nov 24, 2025Updated 3 months ago
- A web-based, interactive pangenome visualization tool☆21Apr 10, 2023Updated 2 years ago
- Very simple and configurable all-in-one dotplot program☆14Apr 1, 2023Updated 2 years ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- ☆41May 19, 2025Updated 9 months ago
- GFA insert into GenomicSQLite☆49Jun 7, 2021Updated 4 years ago
- Complete assemblies of non-human primate genomes☆57May 20, 2025Updated 9 months ago
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆82Jan 20, 2026Updated last month
- Centromere mapping and annotation pipeline☆23Updated this week
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆104Jul 23, 2024Updated last year
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆383Feb 24, 2026Updated last week
- Everything but the kitchen sink☆12Feb 6, 2025Updated last year
- The complete sequence of a Chinese individual☆11Oct 8, 2024Updated last year
- Phased assembly variant caller☆134Dec 4, 2024Updated last year