yana-safonova / PatchWorkPlotView external linksLinks
A tool for visualization of pairwise alignments of multiple sequences
☆17Aug 12, 2025Updated 6 months ago
Alternatives and similar repositories for PatchWorkPlot
Users that are interested in PatchWorkPlot are comparing it to the libraries listed below
Sorting:
- ☆11Feb 4, 2026Updated last week
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆28May 24, 2021Updated 4 years ago
- ☆16Aug 14, 2024Updated last year
- The codes to assemble two sorghum cultivars☆10May 11, 2024Updated last year
- Some components that speed up and reduce resource cost for original ALLHiC☆14Jun 21, 2025Updated 7 months ago
- Gene-based test of allele-specific expression without requiring haplotype information☆16Mar 20, 2018Updated 7 years ago
- ☆17Nov 26, 2023Updated 2 years ago
- Taxa Insertion by Parsimony☆15Jan 22, 2025Updated last year
- A Toolkit for analyzing next-generation DNA Re-Sequencing data☆14Feb 15, 2022Updated 4 years ago
- Flexible linear mixed model framework for Genome Wide Association Studies☆18Nov 6, 2025Updated 3 months ago
- CATG (Collinearity-based Assembly correcTor GUI) is a tool that can correct genome assembly with collinearity and generate tour files for…☆17Jan 24, 2026Updated 3 weeks ago
- A Rust-Based suite of utilities for ultra-fast genomic feature extraction☆41Dec 18, 2025Updated last month
- ☆20Sep 6, 2024Updated last year
- Whole genome visualization and comparative genomics in R☆21Feb 18, 2025Updated 11 months ago
- ☆16Dec 25, 2024Updated last year
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆37Feb 15, 2025Updated last year
- ☆15Jan 19, 2022Updated 4 years ago
- Simple tools for working with Hi-C data☆18Dec 19, 2018Updated 7 years ago
- A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads☆49Sep 22, 2025Updated 4 months ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆20Updated this week
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆19Jul 13, 2020Updated 5 years ago
- A tool for evaluating long-read de novo assembly results☆52Aug 25, 2024Updated last year
- Structure variants calling and genotyping scripts for pan-Zea☆22Nov 17, 2022Updated 3 years ago
- Phyling: phylogenetic inference from annotated genomes☆30Jan 30, 2026Updated 2 weeks ago
- We developed a protocol of in situ high throughput multi-way contact long read Pore-C sequencing (in situ HiPore-C), a strategy that inte…☆23Mar 17, 2024Updated last year
- ☆26Mar 23, 2024Updated last year
- Efficient merging of structural variants from multiple SV callers and samples☆32Feb 6, 2026Updated last week
- Metagenomic binning based on Hi-C data☆28Aug 7, 2025Updated 6 months ago
- GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…☆54Feb 27, 2020Updated 5 years ago
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆28Aug 15, 2024Updated last year
- ☆28Mar 4, 2022Updated 3 years ago
- A haplotype analysis toolkit for natural variation study.☆31Oct 3, 2023Updated 2 years ago
- An R package to infer and analyze synteny networks from protein sequences☆36Jul 23, 2025Updated 6 months ago
- A organelle de novo genome assembly toolkit☆74Feb 22, 2025Updated 11 months ago
- A snakemake workflow for de novo genome assembly. It produces chromosome-scale primary/phased assemblies complete with organelles (mitoch…☆33May 14, 2025Updated 9 months ago
- Robust identification of orthologous Synteny with the Orthology Index☆38Feb 1, 2026Updated 2 weeks ago
- Fast, accurate taxonomic assignments for the human vaginal microbiota☆11Updated this week
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆77Dec 3, 2025Updated 2 months ago
- ☆145Nov 5, 2025Updated 3 months ago