Dotplot large Genomes in an Interactive, Efficient and Simple way
☆113Feb 20, 2026Updated last month
Alternatives and similar repositories for dgenies
Users that are interested in dgenies are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Generate an interactive dot plot from mummer or minimap alignments☆212Jan 17, 2024Updated 2 years ago
- ☆45Dec 11, 2016Updated 9 years ago
- Make colorful identity heatmaps of genomic sequence☆128May 24, 2024Updated last year
- k-mer based assembly evaluation☆341Jun 28, 2024Updated last year
- Synteny and Rearrangement Identifier☆454Mar 17, 2026Updated last week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- RepeatIdentifier☆72Mar 19, 2025Updated last year
- Python library to facilitate genome assembly, annotation, and comparative genomics☆893Mar 12, 2026Updated 2 weeks ago
- Close assembly gaps using long-reads at high accuracy.☆51Feb 20, 2024Updated 2 years ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Nov 22, 2019Updated 6 years ago
- Pangenome-based genome inference☆163Dec 1, 2025Updated 3 months ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆108Jun 6, 2021Updated 4 years ago
- De novo assembly from Oxford Nanopore reads.☆89Feb 16, 2026Updated last month
- Structural Variant Identification Method using Genome Assemblies☆139Sep 16, 2022Updated 3 years ago
- Mummer alignment tool☆551Feb 4, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Highly customizable, ambiguity-aware dotplots for visual sequence analyses☆115Feb 12, 2026Updated last month
- Long-reads Gap-free Chromosome-scale Assembler☆79Mar 21, 2023Updated 3 years ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆384Mar 11, 2026Updated 2 weeks ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆77Aug 30, 2016Updated 9 years ago
- This is the standalone version of the EviAnn pipeline☆143Mar 13, 2026Updated 2 weeks ago
- Improved Phased Assembler☆28Mar 11, 2022Updated 4 years ago
- Segmental Duplication Assembler (SDA).☆44May 7, 2023Updated 2 years ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆107Nov 17, 2025Updated 4 months ago
- Program for aligning DNA sequences, a pairwise aligner.☆243Updated this week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Eukaryotic Genome Annotation Pipeline☆383Feb 12, 2026Updated last month
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆240Mar 4, 2026Updated 3 weeks ago
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Feb 6, 2022Updated 4 years ago
- A genome browser designed for complex structural variants and long reads.☆298Jun 6, 2025Updated 9 months ago
- A Hi-C scaffolding method☆22Dec 22, 2021Updated 4 years ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆123Feb 24, 2026Updated last month
- ☆42May 19, 2025Updated 10 months ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆188May 17, 2024Updated last year
- ☆17Nov 19, 2025Updated 4 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 6 months ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆62Mar 12, 2026Updated 2 weeks ago
- ☆237Jan 24, 2025Updated last year
- ☆44Jul 23, 2025Updated 8 months ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆14Apr 28, 2020Updated 5 years ago
- Official home of genome aligner based upon notion of Cactus graphs☆666Updated this week
- Tools for fast and flexible genome assembly scaffolding and improvement☆561Feb 14, 2024Updated 2 years ago