Dotplot large Genomes in an Interactive, Efficient and Simple way
☆115Jun 8, 2026Updated last week
Alternatives and similar repositories for dgenies
Users that are interested in dgenies are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Generate an interactive dot plot from mummer or minimap alignments☆219Jan 17, 2024Updated 2 years ago
- ☆46May 1, 2026Updated last month
- Make colorful identity heatmaps of genomic sequence☆138May 24, 2024Updated 2 years ago
- k-mer based assembly evaluation☆343May 21, 2026Updated 3 weeks ago
- Synteny and Rearrangement Identifier☆473May 20, 2026Updated 3 weeks ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- RepeatIdentifier☆74Mar 19, 2025Updated last year
- Highly customizable, ambiguity-aware dotplots for visual sequence analyses☆122Apr 20, 2026Updated last month
- Python library to facilitate genome assembly, annotation, and comparative genomics☆918May 2, 2026Updated last month
- Close assembly gaps using long-reads at high accuracy.☆51Feb 20, 2024Updated 2 years ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Nov 22, 2019Updated 6 years ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆109Jun 6, 2021Updated 5 years ago
- Pangenome-based genome inference☆173Updated this week
- De novo assembly from Oxford Nanopore reads.☆89Feb 16, 2026Updated 4 months ago
- Structural Variant Identification Method using Genome Assemblies☆142Sep 16, 2022Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Mummer alignment tool☆561Feb 4, 2025Updated last year
- Long-reads Gap-free Chromosome-scale Assembler☆79Mar 21, 2023Updated 3 years ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆397Apr 22, 2026Updated last month
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆79Aug 30, 2016Updated 9 years ago
- Improved Phased Assembler☆28Mar 11, 2022Updated 4 years ago
- This is the standalone version of the EviAnn pipeline☆151May 14, 2026Updated last month
- Segmental Duplication Assembler (SDA).☆44May 7, 2023Updated 3 years ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆110Nov 17, 2025Updated 7 months ago
- Program for aligning DNA sequences, a pairwise aligner.☆250May 20, 2026Updated 3 weeks ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Feb 6, 2022Updated 4 years ago
- A genome browser designed for complex structural variants and long reads.☆303Jun 6, 2025Updated last year
- Eukaryotic Genome Annotation Pipeline☆388Jun 12, 2026Updated last week
- A Hi-C scaffolding method☆22Dec 22, 2021Updated 4 years ago
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆262Jun 12, 2026Updated last week
- ☆42May 19, 2025Updated last year
- Identify and find telomeres, or telomeric repeats in a genome.☆165Nov 24, 2025Updated 6 months ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆190May 17, 2024Updated 2 years ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆124Updated this week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆24Nov 19, 2025Updated 7 months ago
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 9 months ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆67May 26, 2026Updated 3 weeks ago
- ☆245Jan 24, 2025Updated last year
- ☆47Jul 23, 2025Updated 10 months ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆14Apr 28, 2020Updated 6 years ago
- Official home of genome aligner based upon notion of Cactus graphs☆687Updated this week