zhangrengang / TEsorter
TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes
☆94Updated 2 months ago
Alternatives and similar repositories for TEsorter:
Users that are interested in TEsorter are comparing it to the libraries listed below
- High-precision TE Annotator☆109Updated this week
- ☆78Updated 9 months ago
- A pipeline used to identify different modes of duplicated gene pairs☆98Updated last month
- source code for EVM☆109Updated 4 months ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆101Updated last year
- tomato graph pangenome☆81Updated 2 years ago
- Version 5 of the CAFE phylogenetics software☆131Updated 2 months ago
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆130Updated last month
- Nanopore data assembler☆149Updated 3 years ago
- Structural Variant Identification Method using Genome Assemblies☆108Updated 2 years ago
- NLR-Annotator upload☆65Updated last year
- A library for running k-mers based GWAS☆107Updated 5 months ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆80Updated 3 years ago
- A genome completeness evaluation tool based on miniprot☆204Updated last month
- Yet another Hi-C scaffolding tool☆143Updated 5 months ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆97Updated last year
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆199Updated 3 weeks ago
- Application of pan-genome for population☆104Updated 6 months ago
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆56Updated last year
- Mapping pipeline for data generated using Arima-HiC☆76Updated 10 months ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆179Updated last month
- Neural network classification of TE☆87Updated 2 years ago
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆99Updated last month
- Synteny Imager☆61Updated 7 months ago
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆86Updated 8 months ago
- GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…☆50Updated 5 years ago
- Collection of tools for the analysis of CpG data☆80Updated 2 months ago
- SynVisio is an interactive multiscale visualization tool that lets you explore the results of McScanX a popular synteny and collinearity …☆84Updated last year
- ☆71Updated last month
- A list of software for pangenomics☆110Updated this week