vertgenlab / gonomics
A collection of genomics software tools written in Go (golang).
☆83Updated last week
Alternatives and similar repositories for gonomics:
Users that are interested in gonomics are comparing it to the libraries listed below
- Bioinformatic infrastructure libraries☆78Updated 4 years ago
- A lightweight and high-performance bioinformatics package in Golang☆92Updated 4 months ago
- long read RNA-seq quantification☆73Updated last week
- Go / Golang Bioinformatics Library☆45Updated 3 months ago
- PGR-TK: Pangenome Research Tool Kit☆96Updated 9 months ago
- A versatile toolkit for k-mers with taxonomic information☆77Updated 5 months ago
- A method for variant graph genotyping based on exact alignment of k-mers☆87Updated 5 years ago
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆184Updated last year
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆32Updated 3 weeks ago
- SV detection tool for nanopore sequence reads☆89Updated 4 months ago
- expressions on VCFs☆66Updated this week
- Variant calling tool for long-read sequencing data☆102Updated 2 months ago
- Tools to annotate genomes using long read transcriptomics data☆45Updated 4 years ago
- SQL-like query language for the SAM/BAM file format☆26Updated last year
- Grep for FASTQ files☆94Updated last month
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆42Updated 2 weeks ago
- (WIP) best-practices workflow for rare disease☆60Updated 6 months ago
- SNP-Assisted SV Calling and Phasing Using ONT☆24Updated last year
- Fasten toolkit, for streaming operations on fastq files☆77Updated last week
- A genome browser in your Jupyter notebook☆30Updated last month
- SRF: Satellite Repeat Finder☆89Updated last year
- Ultra-efficient taxonomic mapping of NGS data☆51Updated 3 years ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆81Updated this week
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆84Updated 6 months ago
- ☆45Updated 3 weeks ago
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 3 years ago
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆72Updated 4 months ago
- Evaluating genome assemblies☆79Updated last month
- Graph realignment tools for structural variants☆156Updated 2 years ago
- Toolkit for calling structural variants using short or long reads☆100Updated 2 weeks ago