vertgenlab / gonomics
A collection of genomics software tools written in Go (golang).
☆83Updated this week
Alternatives and similar repositories for gonomics:
Users that are interested in gonomics are comparing it to the libraries listed below
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆185Updated last year
- A lightweight and high-performance bioinformatics package in Golang☆92Updated 5 months ago
- PGR-TK: Pangenome Research Tool Kit☆97Updated 9 months ago
- long read RNA-seq quantification☆73Updated last week
- SQL-like query language for the SAM/BAM file format☆27Updated last year
- A versatile toolkit for k-mers with taxonomic information☆77Updated 6 months ago
- Grep for FASTQ files☆95Updated 2 weeks ago
- Tools to annotate genomes using long read transcriptomics data☆45Updated 4 years ago
- Variant calling tool for long-read sequencing data☆104Updated 2 weeks ago
- biogo high throughput sequencing repository☆126Updated 10 months ago
- Dynamic, adaptive sampling during nanopore sequencing☆29Updated 4 months ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆82Updated last week
- Bioinformatic infrastructure libraries☆78Updated 4 years ago
- Go / Golang Bioinformatics Library☆45Updated 4 months ago
- (WIP) best-practices workflow for rare disease☆60Updated 7 months ago
- SRF: Satellite Repeat Finder☆90Updated last year
- Evaluating genome assemblies☆83Updated last week
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆31Updated this week
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆72Updated 4 months ago
- Tools for plotting methylation data in various ways☆139Updated last month
- Toolkit for calling structural variants using short or long reads☆100Updated 2 weeks ago
- Fasten toolkit, for streaming operations on fastq files☆77Updated 3 weeks ago
- ☆37Updated this week
- SV detection tool for nanopore sequence reads☆89Updated 5 months ago
- WDL’s and Dockerfiles for assembly QC process☆64Updated this week
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆68Updated last year
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆56Updated last year
- WDL workflows for variant calling and assembly using ONT☆32Updated 2 weeks ago
- Fast FASTQ sample demultiplexing in Rust.☆60Updated this week
- ☆44Updated last month