Alternatives and similar repositories for gw

Users that are interested in gw are comparing it to the libraries listed below

• rpetit3 / fastq-dl
  Download FASTQ files from SRA or ENA repositories.
  ☆343Updated 3 months ago
• BrooksLabUCSC / flair
  Full-Length Alternative Isoform analysis of RNA
  ☆234Updated last week
• igvteam / igv-reports
  Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.
  ☆376Updated 3 months ago
• PacificBiosciences / pbbioconda
  PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.
  ☆276Updated 7 months ago
• snakemake-workflows / dna-seq-gatk-variant-calling
  This Snakemake pipeline implements the GATK best-practices workflow
  ☆259Updated 2 years ago
• agshumate / Liftoff
  An accurate GFF3/GTF lift over pipeline
  ☆504Updated 2 years ago
• PacificBiosciences / IsoSeq
  Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads
  ☆220Updated 2 months ago
• ryanlayer / samplot
  Plot structural variant signals from many BAMs and CRAMs
  ☆546Updated last year
• nf-core / nanoseq
  Nanopore demultiplexing, QC and alignment pipeline
  ☆211Updated 2 months ago
• schneebergerlab / plotsr
  Tool to plot synteny and structural rearrangements between genomes
  ☆320Updated 5 months ago
• BioInfoTools / BBMap
  (Not Offical) BBMap short read aligner, and other bioinformatic tools.
  ☆239Updated 4 years ago
• Magdoll / cDNA_Cupcake
  Miscellaneous collection of Python and R scripts for processing Iso-Seq data
  ☆275Updated last year
• GoekeLab / bambu
  Reference-guided transcript discovery and quantification for long read RNA-Seq data
  ☆218Updated last month
• Dfam-consortium / RepeatMasker
  RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.
  ☆272Updated this week
• wdecoster / nanopack
  An overview of all nanopack tools
  ☆268Updated 2 years ago
• ConesaLab / SQANTI3
  Tool for the Quality Control of Long-Read Defined Transcriptomes
  ☆237Updated last week
• gpertea / gffcompare
  classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF
  ☆241Updated 2 months ago
• TransDecoder / TransDecoder
  TransDecoder source
  ☆297Updated 3 weeks ago
• timflutre / trimmomatic
  Read trimming tool for Illumina NGS data.
  ☆145Updated 10 years ago
• rvalieris / parallel-fastq-dump
  parallel fastq-dump wrapper
  ☆298Updated 2 years ago
• sortmerna / sortmerna
  SortMeRNA: next-generation sequence filtering and alignment tool
  ☆276Updated last month
• gpertea / gffread
  GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more
  ☆434Updated 8 months ago
• CompEpigen / figeno
  Tool for plotting sequencing data along genomic coordinates.
  ☆317Updated 2 months ago
• NBISweden / GAAS
  Genome Assembly and Annotation Service code
  ☆214Updated last year
• wwood / kingfisher-download
  Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.
  ☆274Updated last month
• GoekeLab / awesome-nanopore
  A curated list of awesome nanopore analysis tools.
  ☆292Updated 2 months ago
• usadellab / Trimmomatic
  ☆266Updated last month
• lgmgeo / AnnotSV
  Annotation and Ranking of Structural Variation
  ☆262Updated last week
• ablab / IsoQuant
  Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)
  ☆180Updated last week
• nf-core / fetchngs
  Pipeline to fetch metadata and raw FastQ files from public databases
  ☆179Updated last month