Simple-to-use interactive comparison of two bacterial genomes
☆28Jan 30, 2026Updated 3 months ago
Alternatives and similar repositories for ziplign
Users that are interested in ziplign are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆30Mar 6, 2025Updated last year
- Plasmid analysis using rearrangement distances☆55May 13, 2026Updated last week
- Variant call adjudication☆17Jun 13, 2024Updated last year
- Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)☆41Apr 17, 2024Updated 2 years ago
- Parallel/Homoplasic SNP Finder☆20May 3, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Iterative Gene clUster Analysis, a high-throughput method for gene cluster family identification.☆17Feb 26, 2026Updated 3 months ago
- Split Kmer Analysis☆67May 26, 2022Updated 4 years ago
- sunburst plots for taxonomy - working to update Krona☆44Sep 22, 2025Updated 8 months ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆34Aug 1, 2025Updated 9 months ago
- Neptune: Genomic Signature Discovery☆21May 1, 2026Updated 3 weeks ago
- Wavefront alignment algorithm (WFA) in Golang☆32Jul 26, 2025Updated 10 months ago
- Interpretative standards for AMR genotypes☆29May 11, 2026Updated 2 weeks ago
- ☆38Jan 12, 2026Updated 4 months ago
- Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets☆25Apr 30, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Follow up to Grace Blackwell's 661k dataset, for 2023☆141Apr 10, 2026Updated last month
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆36Jul 21, 2025Updated 10 months ago
- ☆30Updated this week
- A new high-resolution long-read metagenome assembler for even noisy reads☆148Apr 5, 2026Updated last month
- Simulate mutations in genomes☆15Jun 15, 2020Updated 5 years ago
- Quickly generate consensus assemblies for bacterial genomes☆14Sep 12, 2025Updated 8 months ago
- Sequence-independent identification and removal of adapters/systemic contamination in shotgun sequencing data. https://doi.org/10.1093/bi…☆18Apr 4, 2023Updated 3 years ago
- kmer based feature extraction tool for bioinformatics, metagenomics, AI/ML and more☆45May 8, 2026Updated 2 weeks ago
- Genome size estimation from long read overlaps☆90May 1, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Quality control for phylogenetic analyses☆13May 18, 2026Updated last week
- Taxonomy classification of viral sequences / contigs☆12Jul 15, 2025Updated 10 months ago
- ☆13Aug 15, 2025Updated 9 months ago
- A Rust library providing fully dynamic sets of k-mers with high locality☆47May 13, 2026Updated last week
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆55May 5, 2026Updated 3 weeks ago
- Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.☆107Jan 22, 2026Updated 4 months ago
- A DRAFT, early stage book on snakemake.☆22Nov 1, 2023Updated 2 years ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆86Jan 24, 2026Updated 4 months ago
- Graph-based assembly phasing☆94Nov 25, 2025Updated 6 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆10Dec 16, 2024Updated last year
- Long read aligner for cyclic and acyclic pangenome graphs☆41Dec 20, 2023Updated 2 years ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆23Feb 16, 2026Updated 3 months ago
- ☆15Updated this week
- Contains the code and workflow for the bacterial strain definition paper with Kostas Kostantinidis☆14Dec 4, 2023Updated 2 years ago
- Robust individual and aggregate checksums for nucleotide sequences☆17Mar 3, 2026Updated 2 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆36May 14, 2026Updated last week