martinghunt / ziplignLinks
Simple-to-use interactive comparison of two bacterial genomes
☆16Updated 2 weeks ago
Alternatives and similar repositories for ziplign
Users that are interested in ziplign are comparing it to the libraries listed below
Sorting:
- Genome size estimation from long read overlaps☆61Updated 2 weeks ago
- software to identify primers that can distinguish genomes☆20Updated 7 months ago
- Visualize microbial evolution at the SNP level!☆15Updated last month
- Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)☆37Updated last year
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆31Updated 2 weeks ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆27Updated last month
- Remove human reads from a sequencing run☆39Updated last month
- Fast and space-efficient taxonomic classification of long reads☆43Updated 3 weeks ago
- Chimera: A Versatile Metagenomic Classification Tool☆19Updated this week
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆26Updated last month
- Fast pairwise transmission inference from single genome and/or metagenomic data☆21Updated last month
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆42Updated 3 weeks ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 7 years ago
- sunburst plots for taxonomy - working to update Krona☆40Updated last month
- In silico taxonomic classification of Bacillus cereus group genomes using whole-genome sequencing data☆20Updated last year
- Neptune: Genomic Signature Discovery☆20Updated 10 months ago
- StrainXpress is a de novo assembly method which base on overlap-layout-consensus (OLC) paradigm and can fast and accurately assemble high…☆13Updated last year
- Non-redundant pangenome assemblies from multiple genomes or bins☆13Updated 4 months ago
- MetagenOmic read Re-Assigner and abundance quantifier☆18Updated 7 months ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆22Updated 2 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆52Updated 5 months ago
- Benchmarking different ways of doing read (taxonomic) classification, with a focus on removal of contamination and MTB classification☆12Updated last year
- Quickly get coverage statistics given reads and an assembly☆16Updated last year
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated last week
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆30Updated last month
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆58Updated last year
- ☆12Updated 9 months ago
- Fast viral consensus genome reconstruction☆23Updated 2 months ago
- Plasmid analysis using rearrangement distances☆45Updated 2 weeks ago
- Interpretative standards for AMR genotypes☆23Updated last week