martinghunt / ziplignLinks
Simple-to-use interactive comparison of two bacterial genomes
☆18Updated last week
Alternatives and similar repositories for ziplign
Users that are interested in ziplign are comparing it to the libraries listed below
Sorting:
- software to identify primers that can distinguish genomes☆20Updated last week
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids using protein structural information☆33Updated this week
- Sketch phylogenetic trees and networks☆24Updated 3 weeks ago
- Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)☆39Updated last year
- Visualize microbial evolution at the SNP level!☆15Updated 4 months ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated 3 months ago
- In silico taxonomic classification of Bacillus cereus group genomes using whole-genome sequencing data☆22Updated last year
- sunburst plots for taxonomy - working to update Krona☆42Updated 3 months ago
- Genome size estimation from long read overlaps☆79Updated last month
- Remove human reads from a sequencing run☆46Updated 2 weeks ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆43Updated 2 years ago
- Benchmarking different ways of doing read (taxonomic) classification, with a focus on removal of contamination and MTB classification☆12Updated last year
- Quickly get coverage statistics given reads and an assembly☆16Updated last year
- Strain-level haplotyping for metagenomes with short or long-reads.☆63Updated 8 months ago
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆28Updated 4 months ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆22Updated 5 months ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆27Updated last month
- Fast and space-efficient taxonomic classification of long reads☆43Updated 4 months ago
- Non-redundant pangenome assemblies from multiple genomes or bins☆14Updated 7 months ago
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆34Updated last week
- Chimera: A Versatile Metagenomic Classification Tool☆20Updated this week
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆45Updated 4 months ago
- Plasmid analysis using rearrangement distances☆49Updated 3 months ago
- Fast viral consensus genome reconstruction☆25Updated 5 months ago
- ☆24Updated last week
- MetagenOmic read Re-Assigner and abundance quantifier☆18Updated 11 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 7 years ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆24Updated 2 years ago
- A tool to detect acquired AMR genes directly from long read sequencing data.☆18Updated 4 months ago
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)☆21Updated 7 months ago