martinghunt / ziplignLinks
Simple-to-use interactive comparison of two bacterial genomes
☆18Updated this week
Alternatives and similar repositories for ziplign
Users that are interested in ziplign are comparing it to the libraries listed below
Sorting:
- Genome size estimation from long read overlaps☆62Updated last month
- software to identify primers that can distinguish genomes☆20Updated 9 months ago
- Remove human reads from a sequencing run☆40Updated 3 months ago
- sunburst plots for taxonomy - working to update Krona☆41Updated last month
- Visualize microbial evolution at the SNP level!☆15Updated 2 months ago
- In silico taxonomic classification of Bacillus cereus group genomes using whole-genome sequencing data☆21Updated last year
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆22Updated 2 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆55Updated 6 months ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆43Updated 2 years ago
- ☆23Updated last week
- Fast pairwise transmission inference from single genome and/or metagenomic data☆22Updated 3 months ago
- Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)☆39Updated last year
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated last month
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆27Updated 2 months ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated 2 months ago
- A tool to detect acquired AMR genes directly from long read sequencing data.☆17Updated 2 months ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆38Updated 7 months ago
- Plasmid analysis using rearrangement distances☆46Updated last month
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆27Updated 2 weeks ago
- BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons☆18Updated 7 months ago
- MetagenOmic read Re-Assigner and abundance quantifier☆18Updated 9 months ago
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆43Updated 2 months ago
- Sketch phylogenetic trees and networks☆23Updated 2 months ago
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆31Updated 3 months ago
- Fast viral consensus genome reconstruction☆25Updated 3 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 7 years ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated last year
- Neptune: Genomic Signature Discovery☆20Updated 11 months ago
- Benchmarking different ways of doing read (taxonomic) classification, with a focus on removal of contamination and MTB classification☆12Updated last year
- ☆10Updated 4 months ago