martinghunt / ziplignLinks
Simple-to-use interactive comparison of two bacterial genomes
☆16Updated 2 months ago
Alternatives and similar repositories for ziplign
Users that are interested in ziplign are comparing it to the libraries listed below
Sorting:
- Genome size estimation from long read overlaps☆59Updated last week
- Visualize microbial evolution at the SNP level!☆15Updated 2 weeks ago
- Remove human reads from a sequencing run☆40Updated last month
- Quickly get coverage statistics given reads and an assembly☆15Updated last year
- software to identify primers that can distinguish genomes☆21Updated 7 months ago
- In silico taxonomic classification of Bacillus cereus group genomes using whole-genome sequencing data☆20Updated last year
- MetagenOmic read Re-Assigner and abundance quantifier☆19Updated 7 months ago
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆27Updated last week
- Neptune: Genomic Signature Discovery☆20Updated 9 months ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated 2 months ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆38Updated 5 months ago
- Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)☆37Updated last year
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆23Updated 2 years ago
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆30Updated this week
- sunburst plots for taxonomy - working to update Krona☆40Updated last week
- Fast viral consensus genome reconstruction☆23Updated last month
- Fast and space-efficient taxonomic classification of long reads☆43Updated this week
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆27Updated 2 weeks ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated last year
- Strain-level haplotyping for metagenomes with short or long-reads.☆53Updated 4 months ago
- A streamlined workflow and GUI for real-time species identification and pathogen characterization via nanopore sequencing data. Engineere…☆16Updated 10 months ago
- StrainXpress is a de novo assembly method which base on overlap-layout-consensus (OLC) paradigm and can fast and accurately assemble high…☆13Updated last year
- Non-redundant pangenome assemblies from multiple genomes or bins☆13Updated 3 months ago
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)☆21Updated 3 months ago
- frame-shift correction for long-read (meta)genomics☆34Updated last year
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆33Updated 2 months ago
- PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.☆19Updated 8 months ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆44Updated 2 years ago
- Python package to plot a phylogenetic tree on an existing matplotlib axis.☆24Updated last month
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19Updated last year